<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29947

Description Transducin beta like 1 X-linked receptor 1
SequenceMPDVVQTRQQAYRDKLAQQQAAAAATSTAATNQQGSAKNGENTANGEENGAHTIATRIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK
Length377
PositionTail
OrganismCanis lupus familiaris (Dog) (Canis familiaris)
KingdomMetazoa
Lineage
Aromaticity0.08
Grand average of hydropathy-0.456
Instability index24.39
Isoelectric point6.34
Molecular weight40990.12
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29947
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     389.82|      40|      40|     185|     224|       1
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   67-  100 (39.00/15.56)	...SGSTQLVLRHCirEGGQDVP..S....NKDVTS.............LDWNSEG
  103-  141 (61.57/27.81)	L.ATGSYDGFARI...WTKDGNLASTLGQHKGPIFA.............LKWNKKG
  143-  180 (21.76/ 6.21)	F...........IL..SAGVDKTTIIWDAHTGE..AkqqfpfhsapaldVDWQ...
  185-  224 (71.07/32.96)	F.ASCSTDMCIHVC..KLGQDRPIKTFQGHTNEVNA.............IKWDPTG
  227-  266 (72.68/33.84)	L.ASCSDDMTLKIW..SMKQDNCVHDLQAHNKEIYT.............IKWSPTG
  278-  317 (61.94/28.01)	L.ASASFDSTVRLW..DVDRGICIHTLTKHQEPVYS.............VAFSPDG
  319-  358 (61.81/27.94)	YlASGSFDKCVHIW..NTQTGALVHSYRG.TGGIFE.............VCWNAAG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29947 with Med16 domain of Kingdom Metazoa
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