<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29944
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDLAYVCEWERWPKSTHCPSVPLACAWSCRNLIAFTTDLRNDDQDLTRMIHILDTEHPWDVHSVNSEHSEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESHVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNVFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQSMAVFYSSAAPRAADEPAIKRPRTAGPAVHFKAMQLSWTSLALVGIDNHGKLSMLRISPSMGHTLDVSLALRHLLFLLEYCMVTGYDWWDTLLHVQPGMVQSLVEKLHEEYTRQNAALQQVLSTRILAMKASLCKLSPCTVARVCDYHAKLFLVAVSSTLKSLLRPHFLNTPDKSPGDRLTEVCTKITDADIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSPLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPTSEPDEALVDECCLLPSQLLIPSLDWLPVSDGLVSRLQPKQPLRLHFGKAPTLPTSASTLQLDGLIRAPGQPKIDHLRRLHLGAYPTEECKTCTRCGCVTMLRSPNKTTAVKQWEQRWIKNCVCGGLWRRVPLSYP |
Length | 829 |
Position | Tail |
Organism | Canis lupus familiaris (Dog) (Canis familiaris) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia>
Eutheria> Laurasiatheria> Carnivora> Caniformia> Canidae> Canis.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.019 |
Instability index | 47.65 |
Isoelectric point | 7.71 |
Molecular weight | 91847.50 |
Publications | PubMed=16341006
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP29944
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 97.39| 30| 33| 713| 745| 2
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713- 745 (46.23/39.67) LIPSLDWLPVsDGLVsRlQPKQP.....LRLHFGKAPT
746- 780 (51.16/30.09) LPTSASTLQL.DGLI.R.APGQPkidhlRRLHLGAYPT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 138.24| 45| 200| 78| 124| 4
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78- 124 (75.04/52.47) DQSGSRLL..SADADGQIKCWSM.ADHL.ANSWESHVGSLVeGD..PIVaLSW
277- 327 (63.19/36.26) DMSEQVLLcaSSQTSSIVECWSLrKEGLpVNNVFQQISPVV.GDkqPMI.LKW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 131.23| 33| 35| 626| 658| 10
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592- 622 (25.73/11.11) .......FVLDMNTL..QALQQLLqwvgdFVLYLLASLPN
626- 658 (57.85/33.74) PLRPGHSFLRDGTSL..GMLRELM.....VVIRIWGLLKP
662- 693 (47.65/26.56) PVYTATSDTQDSMSLlfRLLTKLW.....ICCRDEG...P
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.50| 15| 23| 782| 796| 11
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782- 796 (30.13/18.75) ECKTCTRCGCVTMLR
808- 822 (31.37/19.84) EQRWIKNCVCGGLWR
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