<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29939

Description Uncharacterized protein
SequenceMALNATTCYNKAVIAGYGSSYPSPLAAAAGVPSSLMVATAAGSAGGSPSSRSGSSGSSSGPSGYRVKDFNVPLHVDCSVEYEMPSSAKPPVGGKVEPLLMIHPSYYRKAESRTRSLFVNNMPAAASASSGRSRPSAAAAAAAAAAAAVGGVCGRPTIANAADGPPPAKKPYAGPAPGVTASTAAGVYGMVTGAVAAAAGASQWPPLGSSAEHQHHEGKRTLDMVQRQYQQHLQASLPPPMMTAALPTDKTHMTVPKGCSCCQAKLLKRKAQQPPSVPQQQQQQPQQHHIHLHQQQLQQQHLPQPPHLQQQQHLHHHQQQQQQQQQQHHQHLHHQQQQQQQQHHHHQQQQQQQQQQHIHHHHHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEYHKSRQNEPQTPQLWGFNGTIAAVLRNEYGGKPTKTLGRITDPINNILTPTYMF
Length447
PositionTail
OrganismAcyrthosiphon pisum (Pea aphid)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Hemiptera> Sternorrhyncha> Aphidomorpha> Aphidoidea> Aphididae> Macrosiphini> Acyrthosiphon.
Aromaticity0.04
Grand average of hydropathy-0.934
Instability index77.90
Isoelectric point9.66
Molecular weight48811.61
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29939
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     231.32|      29|      29|     314|     342|       1
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  267-  295 (55.69/12.69)	KRKAQQP.PSVPQQQQQQPQQH.HIHLHQQQ
  306-  335 (63.78/15.55)	HLQQQQHlHHHQQQQQQQQQQH.HQHLHHQQ
  336-  365 (65.39/16.12)	QQQQQQH.HHHQQQQQQQQQQHiHHHHHHQQ
  366-  387 (46.46/ 9.41)	QQQQ.......QQQQQQQQQQQ.QQQ.QQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     265.06|      65|      72|      54|     125|       2
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   21-   97 (99.05/48.71)	YPSPLAAAAGVPSSLMVATAAGSAggspssrsgSSGSSSGPSGYRVKDF...NVPLHVD..CSVEY.....EMPSSAKPPVGGkveP
  102-  174 (89.97/45.23)	HPSYYRKAESRTRSLFVNNMPAAA.......saSSGRSR.PSAAAAAAA...AAAAAVGgvCGRPTianaaDGPPPAKKPYAG...P
  175-  246 (76.04/30.28)	APGVTASTAAGVYGMVTGAVAAAAgasqwpplgSSAEHQHHEGKRTLDMvqrQYQQHLQ..ASLPP.....PMMTAALP........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29939 with Med15 domain of Kingdom Metazoa
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