<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29934

Description Uncharacterized protein
SequenceMDKLTESTLKEWGFEQYVVRFKEAEIDFTAFLTLTENMVADLIPIIGHRSKFVNSLKQLNEKPNKESSQVTTTISATMTTNTSATTTMDNSAMMTTTNTITTATDNYTDDPPNLSTHNLDKSLTNLTSSKDIPDAAIRTNAVEDQYPQPRATTTTKPFSNTYIPGSKNTSEIGGQLSSSASENIQKKQYTSEPKPVLPPNQDKMPPQQLNVLAMKNQVQQQQQQQQQQQHQQKQAGQAVQHAVAQQQQQQAQQQAQQQQAALRIMNQQQQQNGPDRQTIWSGTLEWIENVKSLNKIPKITRNVPCIVSANIKNGELELKAETWPNKLIMQFIHKNSIGIIGVAHLKDSKSLFFQPTPCEALESLTKYMTSGYVGCVHFNSALTSHNCDVKVLILLYTHDRKAFVGFIPNDQAAFLDRLCEIKQHKKASSAILRQGQSSQVTTTISATMTTNTSATTTMDNSAMMTTTNTITTATNNYTDDPPKLSTCNIDKSLTNLTSSKDIPDAAIRTNAVEDQYPQPRATTTTKPFFNTYIPGNKNTSEIGGQLSSSASENIQNKQYTSEPKPVLPPNQDKMPPQQLNDQCRKRPSIAVTIKLSDDSHNVATTKIGIPERNSSITFSDSSSSLWKRQRISSNSSSSKQEYDVSLECTTPAFFMVL
Length657
PositionUnknown
OrganismAcyrthosiphon pisum (Pea aphid)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Hemiptera> Sternorrhyncha> Aphidomorpha> Aphidoidea> Aphididae> Macrosiphini> Acyrthosiphon.
Aromaticity0.05
Grand average of hydropathy-0.675
Instability index44.00
Isoelectric point8.41
Molecular weight72923.84
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29934
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     146.21|      19|      20|      68|      86|       1
---------------------------------------------------------------------------
   68-   86 (36.84/18.31)	SQVTTTISATMTTNTSATT
   91-  108 (36.24/17.90)	SAMMTTTN.TITTATDNYT
  438-  456 (36.84/18.31)	SQVTTTISATMTTNTSATT
  461-  478 (36.30/17.94)	SAMMTTTN.TITTATNNYT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     485.60|     102|     368|     109|     210|       2
---------------------------------------------------------------------------
  109-  210 (213.18/120.52)	DDPPNLSTHNLDKSLTNLTSSKDIPDAAIRTNAVEDQYPQPRATTTTK...PFSNTYIPGSKNTSEIGGQLSSSASENIQKKQYTSEPKPVLPPNQDKMPPQQLN
  479-  580 (213.60/120.77)	DDPPKLSTCNIDKSLTNLTSSKDIPDAAIRTNAVEDQYPQPRATTTTK...PFFNTYIPGNKNTSEIGGQLSSSASENIQNKQYTSEPKPVLPPNQDKMPPQQLN
  583-  642 (58.83/27.89)	....................CRKRPSIAV.TIKLSDDSHN...VATTKigiPERNSSITFSDSSSSLWKRQRISSNSSSSKQEY.....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.31|      20|      20|     218|     237|       3
---------------------------------------------------------------------------
  218-  236 (33.74/16.82)	..VQ....QQQQQQQQQQHQQKQAG
  237-  261 (27.29/12.23)	QaVQhavaQQQQQQAQQQAQQQQAA
  263-  282 (36.29/18.65)	R.IM....NQQQQQNGPDRQTIWSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.23|      30|      30|     361|     390|       4
---------------------------------------------------------------------------
  361-  390 (53.28/39.40)	LESLTKYMTSGYVGCVHFN.SALTSHNCDVK
  392-  422 (46.95/33.91)	LILLYTHDRKAFVGFIPNDqAAFLDRLCEIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.27|      22|      31|     294|     315|       5
---------------------------------------------------------------------------
  294-  315 (39.07/29.24)	NK.IPK.ITRNVPCIVS.ANIKNGE
  325-  349 (25.19/16.12)	NKlIMQfIHKNSIGIIGvAHLKDSK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29934 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NSLKQLNEKPNKESSQVTTTISATMTTNTSATTTMDNSAMMTTTNTITTATDNYTDDPPNLSTHNLDKSLTNLTSSKDIPDAAIRTNAVEDQYPQPRATTTTKPFSNTYIPGSKNTSEIGGQLSSSASENIQKKQYTSEPKPVLPPNQDKMPPQQLNVLAMKNQVQQQQQQQQQQQHQQKQAGQAVQHAVAQQQQQQAQQQAQQQQAALRIMNQQQQQNGPDRQT
2) SSKDIPDAAIRTNAVEDQYPQPRATTTTKPFFNTYIPGNKNTSEIGGQLSSSASENIQNKQYTSEPKPVLPPNQDKMPPQQLNDQCRKRPSIAV
3) TTISATMTTNTSATTTMDNSAMMTTTNTITTATNNYTDDPPKLSTCNIDKS
54
498
442
278
591
492










Molecular Recognition Features






MoRF SequenceStartStop




1) SLWKRQRIS
624
632