<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29929

Description Uncharacterized protein
SequenceMQLSQVVTSSGVLMHVYSAERHQQQQQQQQQQQQQQPLQQQQQHGGDFRVPQSPGVVSSSTGSGGVPSPPAQHHHLQLQQQHQHQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRCSLPPAPPSSSAATMRPPAAPGPRCKPVPSAATLTIKTEYSRSPPMLSEEPTSSIPDLEFDGDTVLCRVCGDRASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCNILRINRNRCQYCRLRKCISVGMSRDAVRFGRVPKREKARIMAAMQHSSNSKSQEKAAVAELEDDQRLVASVVRAHLETCDFTSDKVAPTLARAREQPNYTLCHPTLACPLNPSPRPVTGQQELLNDFSKRFSPAIRGVVEFAKRIPGFGLLAQDDQVTLLKAGVFEVLLVRLACMFDSECNSMVTLNGQVLRRESVCAYSNARFLTDSMFEFAERLNAMRLNDSEIGLFNAVIVIAADRPGLRNVEFIERMHKQLKCALQSVLMQNHPDRPSLCQELLKKIPDLRTLNTLHSEKLLAFKMTEQQNQLDQQQQHQQQQHQDTTTTTSIASAAVQHHQNIGGMWSLMMNGTDDFNRKSPEEAGSSSWSDETTSVEDMKSLAMLDEVKSPLGSVSSTESVCSDEYHHGPSKHAASAPLLAASLAGAVCPIRRHAAAPSDELHHQVIVRPMSCRRYQRKQDSPTDSGIESGTEKLDRPMPHSAPTSVCSSPRSTVEDAVMSADSHHPAIEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFRALRSAKDSAEAEAVRPSVATTVHNNSTLLNHLQQSHHHNSPQLHHHLTSSSLSSTHSTLAKSLRETPKMTAEQIKRTEDIHNFIMREDTACSGYQQQLTQQHHHHHHHNNNNHHLHQQQPPTRWQHTPVITSALAQNSCRLSPTPPSSRYASSTVSSGGVLARVLSPSSSSCASPPPSALSMVMRRTPSPNVVNLQVGITNAAAAEAAAAHQQPLNLSKKLSPSPTSAVGSGTTTPPSPAPAQVAMEA
Length1026
PositionTail
OrganismAcyrthosiphon pisum (Pea aphid)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Hemiptera> Sternorrhyncha> Aphidomorpha> Aphidoidea> Aphididae> Macrosiphini> Acyrthosiphon.
Aromaticity0.04
Grand average of hydropathy-0.709
Instability index73.68
Isoelectric point8.76
Molecular weight113737.29
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
nuclear receptor activity	GO:0004879	IEA:InterPro
sequence-specific DNA binding	GO:0043565	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29929
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     121.89|      15|      15|      93|     107|       1
---------------------------------------------------------------------------
   33-   47 (27.95/ 8.61)	QQQQP.LQQQQQHGGD
   72-   86 (33.39/11.70)	QHHHL.QLQQQHQHQQ
   87-  102 (30.28/ 9.94)	QQQQQhQQQQQQQQQQ
  103-  118 (30.28/ 9.94)	QQQQQqQQQQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.44|      10|      93|      23|      32|       2
---------------------------------------------------------------------------
  119-  128 (21.45/ 7.06)	QQQQQQQQQQ
  549-  558 (21.98/ 7.41)	QQQQHQQQQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.78|      13|      15|     317|     331|       4
---------------------------------------------------------------------------
  317-  331 (19.32/15.89)	ETCDFTsdKVAPTLA
  335-  347 (26.46/14.80)	EQPNYT..LCHPTLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.67|      20|      21|     925|     945|       5
---------------------------------------------------------------------------
  925-  944 (30.79/12.88)	SSRYASSTVSS.GGVLARVLS
  947-  967 (35.88/19.61)	SSSCASPPPSAlSMVMRRTPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     112.91|      21|      65|     804|     824|       6
---------------------------------------------------------------------------
  802-  822 (37.23/16.70)	NN..............STLLNHLQQSHHHNSPQLH
  823-  853 (22.92/ 7.22)	HH....ltssslssthSTLAKSLRETPKMTAEQIK
  854-  884 (21.25/ 6.11)	RTedihnfimredtacSGYQQQLTQQHHHH....H
  885-  904 (31.51/12.91)	HH............nnNN..HHLHQQQPPTRWQ.H
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.27|      16|      16|     129|     144|       7
---------------------------------------------------------------------------
   57-   71 (20.77/ 6.41)	VSS.STGSGGVPSPPA.
  137-  152 (31.48/13.42)	PSS.SAATMRPPAAPGP
 1004- 1019 (23.02/ 7.89)	TSAvGSGTTTPP.SPAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.20|      23|      26|     665|     687|       8
---------------------------------------------------------------------------
  665-  687 (43.31/23.65)	C.PIRRHA...AAPSD...ELHHQVIVRPM
  689-  715 (29.78/13.90)	CrRYQRKQ...DSPTDsgiESGTEKLDRPM
  724-  745 (22.11/ 8.38)	C.SSPRSTvedAVMSA...DSHHPAI....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.66|      17|      29|     595|     613|       9
---------------------------------------------------------------------------
  595-  613 (26.35/22.25)	KSPeeAGSSSWSDETTSVE
  625-  641 (30.31/18.66)	KSP..LGSVSSTESVCSDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.98|      28|      33|     451|     482|      10
---------------------------------------------------------------------------
  451-  482 (38.01/34.55)	EFAERlnaMRlNDSEIGLFNAVIVIAADRPGL
  486-  513 (49.98/30.81)	EFIER...MH.KQLKCALQSVLMQNHPDRPSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.73|      10|      33|     213|     224|      14
---------------------------------------------------------------------------
  213-  224 (15.81/17.56)	CEGCKgfFRRSI
  249-  258 (21.92/14.28)	CQYCR..LRKCI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29929 with Med15 domain of Kingdom Metazoa
Unable to open file!