<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29928

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMDLVYSIFRKQAWKTQFQNEQMEEDMCFKCLAKISANNIVAWVTTFDLDDHVNINWGSHVYIADLNVPWKYHKITSNNCTVTTLEWDMYGYSLLIGDKNGAVSIWTCSTDHNLTNWVQVGSKDFRGEPIIAGTFFHLGKKLMLVNEKADNINYFEKFNYVRFTPSLRTWGGTGLPGCLVVSATGMIAALLINDSGEPMISATNSLAVARYRISVVDISYRQNGNFLIVTSDGRPRSPIHCYEVSIKLVNEKSCTIVSQWLPSFFLTFNETVDRVISHVKFLLREGSESLVIGSNSSNGCIIETWELVKKTNPINKVFKKVITEDHPTVCWIKKSSFTVGAQLTALATPKMSISYNQSSCSQYVVAAFSNHQVCCLSRELTQQCLFELSSYCEDNIGKIGLQHSSNIQFSDLDISYLGNVFVVCDNMGNLYLFQLLSVAELNGPLTVAYATLQLEYCLVTGLDWWDLAISLRPNMLEAVCNRFSENFQKQTQVLQQKEYTTYLSIRSFLYKMMPGAQGKRSDLMHLMTLHSICNAFKNVLRVSDIMVDRDPAENISNALKEPIVDIDKILPSLGGKDFTVEPSTLQSLHQLIQWVAQLALNVVSRIPEPRDNVGYNLLNDLYAINSIRELLLMIRIWGLLRPNCLPVFIKNIDNLDVLSVTFRLLSRFVQLGGEHDEMLFDECYTLQSQVNITPLSSVAAGIHEVASPALYYQHLPLKLVFGQEPDCLRYNTSSIDTITNGKQHSDYMKDYDVIRNVYIGKCPLTVKQCNRCEGKMQLVGNSRTAAIRVWENRWARNCRCGGRWRTVKVGGQ
Length811
PositionTail
OrganismAcyrthosiphon pisum (Pea aphid)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Hemiptera> Sternorrhyncha> Aphidomorpha> Aphidoidea> Aphididae> Macrosiphini> Acyrthosiphon.
Aromaticity0.10
Grand average of hydropathy-0.061
Instability index35.47
Isoelectric point6.96
Molecular weight91794.52
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29928
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     171.86|      51|      55|     478|     531|       1
---------------------------------------------------------------------------
  478-  509 (41.15/27.41)	....................................V.CNRFSENFQKQTQVLQQKEYTTYLS..IRSFLY
  510-  563 (68.57/60.87)	KMMPGAQGKrsDL.MHLMTLHS...............iCNAF.KNVLRVSDIMVDRDPAENISnaLKEPIV
  567-  630 (62.14/49.26)	KILPSLGGK..DFtVEPSTLQSlhqliqwvaqlalnV.VSRIPEPRDNVGYNLLNDLYAIN.S..IRELL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.68|      25|      62|      22|      59|       2
---------------------------------------------------------------------------
   33-   59 (43.79/50.91)	KISANNIVawVTTFDLD......................DHVNINW...GSH
   73-  122 (32.89/11.19)	KITSNNCT..VTTLEWDmygyslligdkngavsiwtcstDHNLTNWvqvGSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.85|      35|      62|     207|     242|       3
---------------------------------------------------------------------------
  207-  242 (58.10/50.09)	VARYrISVVDISYRQNGNFLIVTSDGRPRSPIHCYE
  271-  305 (59.74/45.89)	VDRV.ISHVKFLLREGSESLVIGSNSSNGCIIETWE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29928 with Med16 domain of Kingdom Metazoa
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