<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29927

Description Uncharacterized protein
SequenceMTTNNTTAETGLNQILNEIAKVDELVEAFNGYIQKDSLNNCEQIEKLFMMLTNIVIRLNDEQLSMSIKIILKTASTQTVSVRQKVFLNMLQKLVQKHGVSSRLMCECIINSEYLVHTNSEFWIECFHIIKSILDTVDYKGVREILKGCFDKVVAMPKALPASILPQFLALEEVIRYIFDRESCLLPGYFVINEILKVYSENKGWPHWKLGCLVSNFVESFRGAAQMTSMIGHSSMLPVVEHSGYADHLITPWKLDPNTLKLTLKGNIPYPKQLLQPQTKLLRYVLEQPYSRDMVCSMLGLQKMNKQRCIVLEEQLVELIIRSMEKSDKEVTEGADPEENHWLWLHISSQLIYFILFQFAVFPNVVNALHEKLLKKDLHRSRDRLMWVLLQYISGSIQRNSVKNILPVLKLYDLLYPEKEPLPVPDTSNALCTHQMAITCIWIHLLRKALMDNIKFHRPIPLALKAHHEYLQMLVQPSNSALCMGTDYRVPLLCNAFSTNNECLSRPMAALVDAVLGSSSNRGISGSGGTTSPISGNASSSNAMGPTTPLSMAVLDSLTIHAKMSLIHSIVTHVLKLAQSKSNLALAPALAETYSRLLVYTEIESLGIKGFISQVLPTVFKSHAWGILYTLLEMFSYRMHHIQPHYRVQLLSHLHSLAAVPQTNQTQLHLCVESTALRLITGLGSNEVQPQLSRFLSEPKTLVSAECEELNRALVLTLARSMHITGTSASQEGSWCKELLTTIMANTPHTWAPHTLQCFPPALADFFVHNPITKENKQQLKKAVEEEYRNWASMTNENDIIAHFSVPTAHPLFLCLLWKMIIETDRINPIAYKILERIGARALSAHLRKFCDYLVFKFAVSEEGQHVNKCVDAINSMIWKYNIVTIDRLVLCLALRTQEGSEAQVCFFIIQLLLFKGAEFRARVCEFVKENSPEHWKQSNWHEKHLAFHRKYPEKFAPEGILDPASYQPLPVYFGNVCLRFLPVFDIVIHRYLELPPVTKSLETLLDHLGCLYKFHDRPVTYLYNTLHYYESKLRDRPSLKRKLVYAVLGSLCETRGCWTLSESYQRYNIQTPTSTISNSMGTSTDVTVTPSAPIWVPDLEYYVMLVKRITDTMNGNVKFPNIDWRFNEFPNPAVYALYMTCAELMALPLTPASVANSLLDVVMQRYTEIPSHEIHCWINSIGLIMSAMPEPFWVTLQDRIMQMMQSPGLATWHYAHTPFQLFNFDLAHGCMLDNRFIYMLALAHATWHHAGVGHIASIPLFVKEKLGPSVYSEEQFIFLCHLVAPFLSRYNLDKPSPSIVDVTVELFNALERMDKHVQTLHYMDPICDLLYHIKYQYVGNLMKSEVEGIVYRLRLPLQKKLRFITQLSLAEVEAMNQPSADPAVVITNGTNGIATPQNTNAASVPQ
Length1406
PositionTail
OrganismAcyrthosiphon pisum (Pea aphid)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Hemiptera> Sternorrhyncha> Aphidomorpha> Aphidoidea> Aphididae> Macrosiphini> Acyrthosiphon.
Aromaticity0.09
Grand average of hydropathy-0.002
Instability index43.57
Isoelectric point7.31
Molecular weight160071.48
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29927
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.07|      36|      39|    1125|    1163|       1
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 1125- 1163 (55.29/41.95)	RFNEFPNPAVYALYMTCAELM.ALPlTPASVanSLLDVVM
 1165- 1201 (65.78/39.35)	RYTEIPSHEIHCWINSIGLIMsAMP.EPFWV..TLQDRIM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.40|      28|      39|    1213|    1242|       2
---------------------------------------------------------------------------
 1213- 1242 (48.91/38.02)	HYAHTPfqLF.NFDLAHGCMLDNRFIYMLAL
 1254- 1282 (46.49/29.05)	HIASIP..LFvKEKLGPSVYSEEQFIFLCHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.81|      39|      39|     473|     511|       3
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  473-  511 (69.55/39.29)	LVQPSNSALCMGTDYRVPLLCNAFSTNNECLSRPMAALV
  515-  553 (66.27/37.12)	LGSSSNRGISGSGGTTSPISGNASSSNAMGPTTPLSMAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.90|      11|      37|      45|      55|       4
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   45-   55 (19.54/15.58)	EKLFM.MLTNIV
   83-   94 (14.36/ 9.03)	QKVFLnMLQKLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     218.48|      70|     727|     613|     699|       5
---------------------------------------------------------------------------
  613-  699 (102.87/111.80)	QVLPTVFKSHAWGILYTLLEMFSYRMHHIqphyrvqllSHLhSLAAVPQTNQTQLHLCVestalrLITGlGSNEV.QPQLSRFLSEPK
 1336- 1406 (115.61/79.96)	QYVGNLMKSEVEGIVYRLRLPLQKKLRFI.........TQL.SLAEVEAMNQPSADPAV......VITN.GTNGIaTPQNTNAASVPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.93|      11|      17|     101|     111|       6
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  101-  111 (22.31/11.70)	SRLMCEC..IINS
  119-  131 (17.62/ 7.86)	SEFWIECfhIIKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.70|      13|      18|     163|     175|       7
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  163-  175 (20.84/13.49)	ILPQFLALEEVIR
  184-  196 (21.87/14.57)	LLPGYFVINEILK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.02|      16|      39|     750|     767|       8
---------------------------------------------------------------------------
  750-  767 (27.01/24.46)	WAPHTLQcfPPALADFFV
  790-  805 (30.02/18.14)	WASMTNE..NDIIAHFSV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     258.06|      83|     630|     327|     414|       9
---------------------------------------------------------------------------
  327-  414 (134.40/100.33)	DKEVTEGA.DPEENHWLWLHISSQLIYF......ILFQFAVFPNVVNALhEKLLKK..DLHRSRDR...LMWVLLQYISGSIQ.RNSVKNILpvlkLYDLL
  953- 1048 (123.67/78.92)	EKFAPEGIlDPASYQPLPVYFGNVCLRFlpvfdiVIHRYLELPPVTKSL.ETLLDHlgCLYKFHDRpvtYLYNTLHYYESKLRdRPSLKRKL....VYAVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.68|      17|      17|     253|     269|      10
---------------------------------------------------------------------------
  253-  269 (29.73/26.13)	K.LDPNTLKLTLKGNIPY
  272-  289 (25.95/21.50)	QlLQPQTKLLRYVLEQPY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.99|      11|     216|    1066|    1076|      11
---------------------------------------------------------------------------
 1066- 1076 (20.74/11.33)	RYNIQTPTSTI
 1289- 1299 (21.24/11.78)	RYNLDKPSPSI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29927 with Med23 domain of Kingdom Metazoa
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