Description | Mediator of RNA polymerase II transcription subunit 1 |
Sequence | MNAATQSAVLLHNGISEDKSRKLQMQLMMEKLRSKALQSQYKPLTDSIKNIKLALLEKRINVDPNEKCLVQKSLDLLQQNIKVTTLQTMIERLDSVSRHLGLKFTVGPSGKDIFVSSDMFYLEIILEDNGGVKDVKIHHDGKSEPQSCADLIKSLANCDFADFTSQLEGLASIYQLNADKMVKCRAFNALQTLEADLETFAQVHYTYHKDLISMVHKTPLGVVKPRRGGHPMKIIFFVSPYDLLDVENNTMMNLDKETLDVGCYATVCIEAATTTNVQSTSLLSASRSSTGINTPIFVPFTVQNSITLPAVFVLRLNEPMPICLQLAENIKSVIEMDLEMSAPRSLLGMIIEPSSQPLSVTLPDQQHCYFLTDSNLKGVFIQNIKFTHPSQVTRIIAYLRQQALFNCLIRSCVRPECQQEMFNTTVFEIAAYEEMSWQHLVVSFEHPIEESLATAEFDLSDISRLQCQVYTSSSETNGESVLTSPEFASRVLQRCFSIPITMRSLIQTWERENQQSLETNIKNNLSGTGGSNNLGDSSDLNQHFADPSAGPDFPSDLDVKLEPLDGASSLDCFPASMIQRDLDQYISDPSFLPDIDFNQFPMDVDQEEQKEQSSFRDASLQEDPPDPKNSPTKTEELISILADDNGKGEDEKPPPDTGQVIIETSSDDSVEKSSSTVSGEFDTINEDVEQSSQSLFEIDDDGPDLHDLNDVKEFIKMTAKDVALVSMKDEDKKDITSDKIHQSPSVSITAVDLSSIPSPQILPQVTVDRRPNIEVIPIPNVPSSITITPISAKTIAEEKSKKSKKDIEGKIEKKRKRKLETETNVPEKLKKHSGSLKMSDSSRSSSPSDYASNQLPSSTMMMKLGTAQKLKQSTSPTLSISSVSLPNSNKYTVTSPKSNSGKPSLSALKMSVHSPKSESKQKSKEFSKDKEKRSYASSNSSLSQSPKSSKSSSKKSDIEDLGTPIPPDSNKAQMKCRKLSAVIDRLSKDKTAQHYSVDSEVPKNKESTPKAFDKGIALNTNINMKNPDSYQVKHSSDGMKITINKTRTKESKQKSSVAGSPKPGPKSGSFSGLNSKKTTYSIPKPGPSSSQSKQSFSVPKNKSNLTVTKVKSGSGKIRSEKSIFARAEMRKSSPTSKDEESLKVVNPVESIIKHKLDTSKFQIPKLSARANADEKRCTETKADTSKPMDLAKKSDVDKKYNQGDYICQKKSTTERLNSLPGITVTTVEERLKPKESALSSLKIDLPLISFHTPKADTTVEMSECKDYSQKKEEIPNNSVYQPKPVTPVTTYATTPSVSVHILKSPVPSPLLVPSPHSASPSITDEELIDDAFVRVGK |
Length | 1337 |
Position | Middle |
Organism | Acyrthosiphon pisum (Pea aphid) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Hemiptera> Sternorrhyncha> Aphidomorpha> Aphidoidea> Aphididae> Macrosiphini> Acyrthosiphon. |
Aromaticity | 0.05 |
Grand average of hydropathy | -0.562 |
Instability index | 55.33 |
Isoelectric point | 6.50 |
Molecular weight | 147620.44 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364059 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP29924 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 7| 259.62| 44| 52| 884| 927| 1 --------------------------------------------------------------------------- 834- 878 (41.45/18.54) GSLK.....MS.D.SSRS..SS...PSDYA.......snQL.PSSTmmmKLGTA.QKL...KQSTSPTL 879- 905 (23.24/ 6.38) .............................S.....issvSL.PNSN...KYTVT.SPK...SNSGKPSL 906- 958 (55.32/27.80) SALK.....MSVH.SPKS..ESKQKSKEFS...kdkekrSY.ASSN...SSLSQ.SPKsskSSSKKSDI 959- 986 (28.61/ 9.97) EDLG.....TPI.............................pPDSN...KAQMK.CRK...LSAVIDRL 987- 1036 (40.31/17.78) SKDK.....TAQHySVDS..EV.PKNKE.StpkafdkgiAL..NTN....INMK.NPD...SYQVKHSS 1037- 1070 (35.46/14.54) DGMK.....ITIN.KTR.tkESKQKSS.........................VAgSPK...PGPKSGSF 1071- 1116 (35.24/14.40) SGLNskkttYSIP.KPGP..SSSQSKQSFS...vpknksNL..........TVT.KVK...SGSGK... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 223.59| 52| 52| 648| 699| 2 --------------------------------------------------------------------------- 501- 547 (34.13/15.76) .........TMRSLIQ....TwerEN.............QQSLETNiKNNLSGTGGSNNlGDS...SDL.NQH.FA...DP 550- 621 (46.26/24.51) GPDF..PSDL.DVKLEpldgA...SSldcfpasmiqrdlDQYISDP.SFLPDIDFNQFP.MDVdqeEQK.EQSSFRdasLQ 648- 699 (84.43/52.04) GEDEKPPPDTGQVIIE....T...SS.............DDSVEKS.SSTVSGEFDTIN.EDV...EQS.SQSLFE...ID 702- 752 (58.77/33.53) GPDLHDLNDVKEFIKM....T...AK.............D..VALV.SMKDEDKKDITS.DKI...HQSpSVSITA...VD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 115.65| 36| 43| 323| 358| 3 --------------------------------------------------------------------------- 323- 358 (60.35/43.64) CLQLAE.NIKSVIEMDLEMSAPRSLLGMIIEPSSQPL 368- 404 (55.30/39.30) CYFLTDsNLKGVFIQNIKFTHPSQVTRIIAYLRQQAL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 52.15| 18| 23| 1155| 1175| 4 --------------------------------------------------------------------------- 1155- 1175 (25.57/21.27) KLDTSKfqiP.KLSARANADEK 1181- 1199 (26.57/13.42) KADTSK...PmDLAKKSDVDKK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 43.47| 12| 23| 756| 767| 6 --------------------------------------------------------------------------- 756- 767 (21.78/11.33) IPSPQILPQVTV 776- 787 (21.69/11.26) IPIPNVPSSITI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 79.87| 24| 131| 1128| 1151| 7 --------------------------------------------------------------------------- 1123- 1150 (33.53/16.35) I.....faraEMRKSSPTSKDEESLKVVNPVES 1229- 1249 (22.99/ 8.79) ............ERLKPKESALSSLKIDLPLIS 1250- 1278 (23.35/ 9.05) FhtpkadttvEMSECKDYSQKKEEI....PNNS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 57.69| 16| 22| 1282| 1297| 8 --------------------------------------------------------------------------- 1282- 1297 (28.65/12.70) PKPVTPVTTYATTPSV 1307- 1322 (29.04/12.97) PSPLLVPSPHSASPSI --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) EKSIFAR 2) TDEELIDDAFVRVG | 1120 1323 | 1126 1336 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab