<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29915

Description Uncharacterized protein
SequenceMEPSKVTSKTSSLKSLVLKAWGERWTEIQWGISIKSVLPRGVSGDVYNLADIILSQALVGSYPNELVLSYLRHSLNCQLVSYAAILQRISKYDKFQKRSCVIILLDFLESTLHGITCRGKPEESVLAVALLSLVDWLLTCVRSGHVPKDGTANRLEDRIANKSIQILEYLLNNDFIFAMLYLAKHDDAELYLVIVNKCQEISQDVQNSMDTNIPHVHNILIQLCNIDFKNSTKLTAMESVTTYNEPITYVLQPLLAIRVMLNPTTETQVLVDKLKMIRQIKGYSNPRLYCELIRACLMCLRDSLSKEDHGPQWGAFTFIKLPHIIKHLCEDSKSFKASEEVIEGFEMLLEMFPLLDFIDSHTACSCIELLLNELVKLEFVTENQCSSIIARRASVVSTLSSPNPPSNVLTIIMRTEPTLQRMLRTLDSDYSKIQEALVSVLSQVLSGNSLELILAAASVEGKLRMFVSKVIKFNEFSKQINLQDGAKSVRTNAVLFDMTFLMLCFITQKYGYQSIFLDGGNDTFFEKWCRQCMVELGNPKSHETIMGECDPSKVTALLTAINDGEDLINCDTSWDQICITIIGATHDVLVAWENSTLSSNDVKRILDAMRSSMFCLPICAAAWLCSYMQVLHQDALLKPLNMVQQLLNVLPEPEESQDNYSKCRQVLMCQIIRKMQQDLNPPTMPSKPSHSIISKDSILEQLIPIWESILEEGWLNVKNAQKLKTTLFTAGSDWFVNNLIKEMMKLQYRDELEKAVDLLFAIFHFDIEFCTLALLELMPQYLFNPDINVELIEPQQTALAKLCSYCIYASVELQQNSIVKNDVHKTPINMDIDIDNSWPPNKIMRLDNGDCDSNGTGINGILLKALVALFRRIAVVASRHEQLCRETHFVLRLLEQLVMCGRGSSQIILRHLPPTLLPNLIRCVPELFTVDLILNLYDLNWPSGRKAATSDLCLLQKTRCSKNTEYL
Length967
PositionTail
OrganismAcyrthosiphon pisum (Pea aphid)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Hemiptera> Sternorrhyncha> Aphidomorpha> Aphidoidea> Aphididae> Macrosiphini> Acyrthosiphon.
Aromaticity0.07
Grand average of hydropathy0.045
Instability index40.99
Isoelectric point5.68
Molecular weight109554.36
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29915
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.82|      42|     175|     136|     185|       1
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  136-  179 (64.56/65.66)	WLLTCVRSGHVPKDgTANRLEDRIANKSiQILEYLLNNDF.....IFAM
  191-  237 (68.26/43.50)	YLVIVNKCQEISQD.VQNSMDTNIPHVH.NILIQLCNIDFknstkLTAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.42|      17|      47|     518|     537|       2
---------------------------------------------------------------------------
  518-  537 (30.47/26.69)	DGGN....DTffeKWCRQCMVELG
  563-  583 (27.96/15.43)	DGEDlincDT...SWDQICITIIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     182.35|      49|     137|     630|     678|       4
---------------------------------------------------------------------------
  251-  294 (41.26/25.27)	.............LQ..PLLAIRVMLNP.....TTETQVLVDKLKM.IRQIkgysnprLYCELIR.....
  630-  678 (88.62/63.65)	VLHQD......ALLK..PLNMVQQLLNV.....LPEPEESQDNYSK.CRQV.......LMCQIIRKMQQD
  762-  816 (52.48/34.36)	IFHFDiefctlALLElmP....QYLFNPdinveLIEPQ..QTALAKlCSYC.......IYASV..ELQQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     202.97|      67|     280|     399|     482|       5
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  399-  478 (86.25/95.48)	LSSPNPPSNVLTIIMRTEPTLQRMLRTLDsdySKIQEALVsvlsQVLSGNSLELILAAASVEgklrMFVSKVIKfnEFSK
  679-  745 (116.72/75.12)	LNPPTMPSKPSHSIISKDSILEQLIPIWE...SILEEGWL....NVKNAQKLKTTLFTAGSD....WFVNNLIK..EMMK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29915 with Med24 domain of Kingdom Metazoa
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