<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29900

Description Uncharacterized protein
SequenceMTEQNKLTRCFDDILRLSSEMLVQQQLKTIQLDTVNGFTQDHQKVLSEKIHSFHGILDEVDVTLLNAVRFVEKFDAVSKEKELERVKQREREAQITAEEEARKKRELKLEQQQQQQHQLEQEQQELERMRKEEQERSNKKDESAGFTQSSTDLDLMGELKMDFDNSDPTSLLSTFGDVGGPIDLSGPSNTDMTSTQTSDNYKQESKRDADNSKNNPSNISDNTADFLLETNPSELNNKNNNDNTNSELPQNKQPAAREPQNTMFNDLDSMDMSLFAELDNPKFGASSLETPPMGNNANSGEANAESRNLGNSFEGNNNNDTINDSNTNNINNTNNNNDKMKDSNGDTNALDPSSMDPLQDNGDDYLTLNDFNDLNIDWNANPNDTTDIFNI
Length391
PositionTail
OrganismKazachstania naganishii (strain ATCC MYA-139 / BCRC 22969 / CBS 8797 / CCRC 22969 / KCTC 17520 / NBRC 10181 / NCYC 3082) (Yeast) (Saccharomyces naganishii)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Kazachstania.
Aromaticity0.05
Grand average of hydropathy-1.181
Instability index42.71
Isoelectric point4.32
Molecular weight44165.06
Publications
PubMed=22123960

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29900
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     239.29|      47|      48|     162|     208|       1
---------------------------------------------------------------------------
  162-  202 (63.49/24.61)	...............D..FDNSDPTS.LLS.............TFGDV...GGP....IDL.SGPSNTDMTSTQTSDNYK
  203-  252 (40.59/13.20)	QESKRD........................adnsknnpsnisdNTADFlleTNP....SEL.NNKNNNDNTNSELPQN.K
  253-  303 (51.88/18.83)	QPAARE..pqntmfnD..LDSMD.MS.L................FAEL...DNPkfgaSSL.ETPP...MGNNANSGEAN
  304-  339 (51.07/18.43)	AESR......................nLGN.............SFEGN...NNN.....DT.INDSNTNNINNTNNNNDK
  341-  385 (32.27/ 9.06)	KDSNGDtnaldpssmDplQDNGDDYL.TLN.............DFNDL...N......IDWnANPNDT............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.55|      23|      42|      79|     101|       3
---------------------------------------------------------------------------
   79-  101 (35.84/26.89)	KEKELERVKQREREAQITAEEEA
  122-  144 (37.70/28.70)	EQQELERMRKEEQERSNKKDESA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29900 with Med2 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RVKQREREAQITAEEEARKKRELKLEQQQQQQHQLEQEQQELERMRKEEQERSNKKDESAGFTQSSTDLDLMGELKMDFDNSDPTSLLSTFGDVGGPIDLSGPSNTDMTSTQTSDNYKQESKRDADNSKNNPSNISDNTADFLLETNPSELNNKNNNDNTNSELPQNKQPAAREPQNTMFNDLDSMDMSLFAELDNPKFGASSLETPPMGNNANSGEANAESRNLGNSFEGNNNNDTINDSNTNNINNTNNNNDKMKDSNGDTNALDPSSMDPLQDNGDDYLTLNDFNDLNIDWNANPNDTTDIFNI
85
391










Molecular Recognition Features






MoRF SequenceStartStop




1) GELKMDF
2) LQDNGDDYLTLNDFNDLNIDWNA
3) MSLFAELD
4) TTDIFNI
157
358
272
385
163
380
279
391