<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29897

Description Uncharacterized protein
SequenceMEHTSNNNTYGMLHRGQSVGDTAVNNHRMGVANGMVQQHMYMQQAQQQQQQQQQQQQQQQQQQQQGRQQFQAGGYFPLADGMLADGVSDIALQQMRHGGAGSVKSGHGERVKETMNNYHPDSVPPAEVVQGHNRSVLNDIVLDPHSADPSTAPTTASNIDVLSSTTDLSPVTNNMDTNGVNGNGVANASAAGAAAAAAVAAATGNGGGGFRPATTGSVKVPTSMADNNGGAASVGAGPMAPADSVSGGKFNFRDITSTNKQLYLSTINNNPHAINDPSIQESLSSFFQPFGVDVSHLPMTNPPIFQSAMPFFDEPVRRRRISISNGQISQLGEDLETVENLYNTQPPPMPHQRFRQPHHTPQQQQANIHIPSNPADGTPGNEMLKQLPMGAVPNMPGNDHWAKPAGESPLGSVLGPQGQPMLNHNNIALHQQQQQQQHYAPHEDFPLVPNNMNVPNQINGLPQPPLTQAQVLKNGPAQQIPQEQHISSFPPPRSNRAQSLSSITSDNSYSVDDKNDPVPGTTAWKRARLLERNRIAASKCRQRKKVAQVQLKNDFNSISRENAIIKKKLKYYEKLILKFKKFTESHFQECHGGAENKDLKIMEELLMIDEDVNEVNENGLIVKLEDDHMLAD
Length632
PositionTail
OrganismKazachstania naganishii (strain ATCC MYA-139 / BCRC 22969 / CBS 8797 / CCRC 22969 / KCTC 17520 / NBRC 10181 / NCYC 3082) (Yeast) (Saccharomyces naganishii)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Kazachstania.
Aromaticity0.05
Grand average of hydropathy-0.737
Instability index49.85
Isoelectric point6.24
Molecular weight68847.68
Publications
PubMed=22123960

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
DNA-binding transcription activator activity, RNA polymerase II-specific	GO:0001228	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29897
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     608.04|     146|     368|       2|     156|       1
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    3-  156 (243.47/96.68)	HTSNNNTyGMLHRGQSVGDTAVNNH........RMGVANGMVQQ.........HMYMQQAQQQQQQQQQQQQQQQQQQQqgrqqfqAGGYFPL..ADGMLADGVSDIALQQMRHGGAGSVKSG...HGERVKETMNNYHPDSVPPAEVVQGHN.RSVLNDIVLDPHS.ADPSTAP...TTA
  208-  284 (77.39/21.53)	.......................................................................................GGFRPA..TTGSVKVPTS.MADN...NGGAASVGAGpmaPADSVSGGKFNFR.......DITSTNK.QLYLSTINNNPHAiNDPSIQE...SLS
  296-  390 (109.89/33.51)	HLPMTNP.PIFQSAMPFFDEPVRRR........RISISNGQISQlgedletveNLYNTQPPPMPHQRFRQPHHTPQQQQ.......ANIHIPSnpADG..TPG..NEMLKQLPMG..................................................................
  392-  523 (177.30/60.35)	................VPNMPGNDHwakpagesPLGSVLGPQGQ.........PMLNHNNIALHQQQQQQQHYAPHED............FPL..VPNNMNVPNQINGLPQPPLTQAQVLKNG...PAQQIPQ...EQHISSFPPPRSNRAQSlSSITSD...NSYS.VDDKNDPvpgTTA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29897 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AATGNGGGGFRPATTGSVKVPTSMADNNGGAASVGAGPMA
2) GEDLETVENLYNTQPPPMPHQRFRQPHHTPQQQQANIHIPSNPADGTPGNEMLKQLPMGAVPNMPGNDHWAKPAGESPLGSVLGPQGQPMLNHNNIALHQQQQQQQHYAPHEDFPLVPNNMNVPNQINGLPQPPLTQAQVLKNGPAQQIPQEQHISSFPPPRSNRAQSLSSITSDNSYSVDDKNDPV
3) GVSDIALQQMRHGGAGSVKSGHGERVKETMNNYHPDSVPPAEVVQGHNRSVLNDIVLDPHSADPSTAPTTASNIDVLSSTTDLSPVTNNMDTNGVNGNGVAN
4) MEHTSNNNTYGMLHRGQSVGDTAVNNHRMGVANGMVQQHMYMQQAQQQQQQQQQQQQQQQQQQQQGRQQFQAGGYFPL
201
332
86
1
240
518
187
78










Molecular Recognition Features






MoRF SequenceStartStop




NANANA