<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29846

Description Uncharacterized protein
SequenceMSESPAPSGVQGDLELELLGLANALYNVGTTVVNDLTKEKDKQGGGKQVGSRVNEVISHLATIDDMARHVGLMVPLQVLTDIDNSRNPLQLTRERLERAATENQFMNGKIQAIDVSGICVLARDVSLIVDGRADVSQTLGRDTRPDLSGALSISARDGFKPSILDGRRPRSDRSVKRRAGRRQRHRRMPSIRAGVGVIDPAVPGRRVDSFSRMSPSGNPLPFCTLLSPRRSSLVVSILSLAPRTVFHAFVNELARLTSTCPAARSPFSHLTLSIRFSARPWTSSSSCAPAHSQMPSYLDSYSALSSSSSRSDVNTVLQSITDAFPSQIDTTTRKSLIQTILDDVTKVSSGNGKKGRLAPKDAFPALLAVKTLGKDPAGSEVIATSTNLSTLLALSHALKDNADASNEALRCIANSLLLISSARDTFIQKDVGGGEAAVDLLEKSTNPERIFLASRILFLCTISVASSATFIQTLVEGKPQGHSGNIIEIIGAKLDGLTKSIMASAKLSREAMTDLLKFTFNLLLHYPKIVDDPPASSPGDDEDQKVMGDCWSDRLDGILPPLLRAFNALPPSAPSPLAAPLTHVIHSLITIPVTSSLRPKWFPLSSPRSPIVKGRDSSPGSASASNNGSPTLGPAKDLKHNAFDRAFSALTVGRRSLSRSGSPTTPAADLLLRAYDLLDVSLTHYLPGAVDSDDSSVRERCRAEGNASLDDVLVPLVLLINKVCVADEATRVRMREWILPADLDRTSPLEGRADFLGRCLRLLQSVHHARLKSAVGEMLYSICDSDASLLASYVGYGNVAGFLFHKGITGQPARASSSTVPAATPSGVPINPITGIAEQPKQEIEMTDEEKEREAEKLFVLFDRLEKSGAIQPSQNPIRKAAQEGRLG
Length888
PositionMiddle
OrganismFibroporia radiculosa
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Polyporales incertae sedis> Fibroporia.
Aromaticity0.04
Grand average of hydropathy-0.166
Instability index52.10
Isoelectric point8.89
Molecular weight95236.34
Publications
PubMed=22247176

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29846
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.04|      23|      24|     299|     321|       2
---------------------------------------------------------------------------
  283-  301 (26.51/13.70)	....SSSSCAPAHSQMPSYLDSY
  302-  324 (35.53/20.89)	SALSSSSSRSDVNTVLQSITDAF
  326-  345 (23.00/10.89)	SQIDTTTRKSLIQTILDDVT...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.77|      12|      36|     620|     631|       3
---------------------------------------------------------------------------
  620-  631 (22.79/13.01)	GSASASNNGSPT
  653-  664 (22.98/13.19)	GRRSLSRSGSPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.50|      27|      36|     218|     244|       4
---------------------------------------------------------------------------
  211-  237 (49.02/27.30)	SRMSPSG......NPLPFCTLLSP.RRSS...LVVSI
  238-  274 (29.67/13.47)	LSLAPRTvfhafvNELARLTSTCPaARSPfshLTLSI
  595-  612 (30.80/14.28)	SSLRPKW......FPLS.....SP..RSP...IV...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.99|      18|      42|     416|     433|       5
---------------------------------------------------------------------------
  416-  433 (32.46/21.51)	LLL..ISSARD.TFIQKDVGG
  457-  477 (22.53/12.75)	LFLctISVASSaTFIQTLVEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.35|      25|     370|       1|      25|       6
---------------------------------------------------------------------------
    1-   25 (42.77/22.83)	MSESPAPSGV.QGDLEL.ELLGLANAL
  372-  398 (32.58/15.79)	LGKDPAGSEViATSTNLsTLLALSHAL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29846 with Med10 domain of Kingdom Fungi
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