<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29845

Description Uncharacterized protein
SequenceMAKEEKEPPPIYELHPPEWLPRAHSMADLGYTGYYPPKPGDEEETLTEINMKNGLILNLSVPAETYSAQDTIKNSLLHNNAISELEDLMRQIFVRRAESVPAIPPSSFRMPSRVTLNDTKRKTWFTDLADPDVPLYKLGKNVPHGAKGHDLLDLLHTNNVAIPRAVWFLRVFGGNETAGLRNKPGYNPTQYSLEWANVVTSYMKKQLSEIALPSAPRPGLNIKQTFKSVLADTDSRERWISRFTYCLELLRTFYAEGLVDNRAFLTWLVQQMGSCNLAQLGFVARLADEYLDGMLVSRALTHHFVEASLNKLMEIRTTSAKEHLQNLEATIKDLVSRCFLALPDAFVSPRIWVMHSAVLEETLSETFATSSSESASEQCVQALRQTYLDHFSDVKRRNEAMLFRHLPPRVVGSLTSALSDIKLLNSLSGKTDMDTVMFFDTSSETQTTFSRKLDILLTWSVTSLQYGDHRPYAAACLLREWRKKVGERAIRHEAASPDEYIQDEVFDWLDTSSDAAEPENLPAVALLFGQLVKHGLFSYQGYVQRLIARGELGLLFGQEVHSRHRDFLRWIAIHSSDSSLIRQRRVTLYGVRARETPEDHNEREVRKEIRALLPELFGGVPSSGETLQTMFWASCSTLLTAPRYEQVRTMKQWLLPILRKHIASRGSGEDAGSHDVLKTFTLAVVLMARTKCYGSMLEASSI
Length702
PositionKinase
OrganismFibroporia radiculosa
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Polyporales incertae sedis> Fibroporia.
Aromaticity0.09
Grand average of hydropathy-0.298
Instability index44.84
Isoelectric point6.52
Molecular weight79478.73
Publications
PubMed=22247176

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29845
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.01|      17|      38|     254|     270|       1
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  254-  270 (30.00/19.41)	YAEGLVDNRAFLTWLVQ
  290-  306 (30.01/19.41)	YLDGMLVSRALTHHFVE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     283.81|      90|     355|     143|     237|       2
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  143-  237 (141.27/99.09)	PHGAKGHDLLDLLHT.NNVAIPR...AVWFLrvFGGNETAGLRNKPGYNPT.....QYSLEWANVVTSYMKKQLSEIALPSAPrPGLnIKQTfKSVLADTDSRE
  497-  595 (142.55/82.64)	PDEYIQDEVFDWLDTsSDAAEPEnlpAVALL..FGQLVKHGLFSYQGYVQRliargELGLLFGQEVHSRHRDFLRWIAIHSSD.SSL.IRQR.RVTLYGVRARE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.27|      33|     245|      85|     119|       3
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   85-  119 (52.49/42.63)	LEDLMRQIFVRRAESVpaIPPSSFRMPSRV...TLNDT
  331-  366 (52.79/35.57)	IKDLVSRCFLALPDAF..VSPRIWVMHSAVleeTLSET
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29845 with Med12 domain of Kingdom Fungi
Unable to open file!