<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29823

Description Uncharacterized protein
SequenceMSQHQNVYAPAPWAPRQANPDEDWTKISDLAERRRIQNRIAQRNYRKKLKRRLEDLERRACTSDGNSSGNGKPTSSNGSSANASNGGSSSSSGSKKQQQQQQQRQQQQQQQQHQQQTQAAAPLTPPELFPAHAYPPPEDMMMAPCGTSPPHAQALAYAEYLVSTTMPVTFPDMAHFDDSIVGDLDHSEVAPYTNCRYMPGMDVSNPAPYDHSNSHMNSSWHQSHFYPVLHPPPYLFLPHLQTSFASSQSPTPPPLGGFSNVQKTSRKLQQILGLEQHLPTNVN
Length283
PositionTail
OrganismGaeumannomyces graminis var. tritici (strain R3-111a-1) (Wheat and barley take-all root rot fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Magnaporthales> Magnaporthaceae> Gaeumannomyces.
Aromaticity0.07
Grand average of hydropathy-0.976
Instability index76.55
Isoelectric point7.83
Molecular weight31519.45
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
DNA-binding transcription factor activity	GO:0003700	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29823
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.03|      24|     168|      76|      99|       4
---------------------------------------------------------------------------
   76-   99 (40.80/21.10)	SNGSSANASNGG.SSSSSGSKKQQQ
  246-  270 (39.23/20.02)	SSQSPTPPPLGGfSNVQKTSRKLQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.83|      19|     194|       6|      24|       5
---------------------------------------------------------------------------
    6-   24 (38.48/17.68)	NVYAPAPWAPRQANPDEDW
  202-  220 (37.35/16.97)	DVSNPAPYDHSNSHMNSSW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29823 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSQHQNVYAPAPWAPRQANPDEDWTKISDLAERRRIQNRIAQRNYRKKLKRRLEDLERRACTSDGNSSGNGKPTSSNGSSANASNGGSSSSSGSKKQQQQQQQRQQQQQQQQHQQQTQAAAPLTPPELFPAHAYPPPEDMMMAPCGTSP
1
149










Molecular Recognition Features






MoRF SequenceStartStop




1) EDWTKISD
22
29