<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29822

Description CMGC/CDK/CDK8 protein kinase
SequenceMCLLPHPCVSLCFLVFPCGLSSRGVESPPLASFADPADRGTGPTGYQSKVRVMDKYKVIGFISSGTYGRVYKALGRQGQPGEFAIKKFKPDKEGEVSYTGISQSAVREMALCSELSHQNVIRLVEIILEDKCIFMVFDYAEHDLLQIIHHHTQQPKHPIPPQTIKSIMFQLLNGCQYLHTNWVLHRDLKPANIMVTSAGEVKIGDLGLARLFWKPLRCLYDGDKVVVTIWYRAPELLLGSKHYTPAVDMWAVGCIFAELLSLRPIFKGEEAKMDAGKKTMPFQRNQMQKIVDIVGLPTKERWPLLPNLPDYQHISSLQQPLPGGGGGSSSSHHGHHQGHYGGGGGSRGGAGSSSSSSSSSSIAGHSNLDKWYYHTISQGQTSGPMQHPPAGSPASLGVEGYKLLAGLLEYDPERRLTAAAALQHPFFSTGGDRPSNNCFEGCKAEYPHRRVSQDDNDIRTSSLPGTKRSGLPDDTLRPGKRVKEN
Length485
PositionKinase
OrganismGaeumannomyces graminis var. tritici (strain R3-111a-1) (Wheat and barley take-all root rot fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Magnaporthales> Magnaporthaceae> Gaeumannomyces.
Aromaticity0.08
Grand average of hydropathy-0.376
Instability index42.78
Isoelectric point8.81
Molecular weight53183.07
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29822
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.64|      32|      34|     357|     388|       2
---------------------------------------------------------------------------
  357-  388 (59.49/36.27)	SSSS.SIAGHSNLDKWY.YHTISQGQTSGPMQHP
  392-  425 (45.14/25.86)	SPASlGVEGYKLLAGLLeYDPERRLTAAAALQHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.73|      16|      17|     214|     230|       3
---------------------------------------------------------------------------
  214-  230 (25.69/21.16)	KPLRCLYdGDK...VVVTIW
  232-  250 (24.04/14.09)	RAPELLL.GSKhytPAVDMW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29822 with CDK8 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NCFEGCKAEYPHRRVSQDDNDIRTSSLPGTKRSGLPDDTLRPGKRVKEN
2) SSLQQPLPGGGGGSSSSHHGHHQGHYGGGGGSRGGAGSSSSSSSSSS
437
315
485
361










Molecular Recognition Features






MoRF SequenceStartStop




1) NLDKWYYHTI
367
376