<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29813

Description Mediator of RNA polymerase II transcription subunit 6
SequenceMDNKTEQLLDEIQWSSPQSVVNFQGIHSNSVLYYLAESPFFDRTSNNAVVFNQAVRNQSMLHIVATREAFEGRLREMAGLEYMVAQEPAETGPGAGTGVWVIRKQTRRKVKAADGTPLPDELEVHADYFVMGENIYMAPSLSDVLSSRIATISSAISKLFPAVSAIQTWTPALGHGYATPAAAAAAPRPRGLESKEPTPMPDSLTPAAGAGAASKAPPPSARTERSAPDARMAEEAFAIHTRYGGEYMDENPITGKPGEFHLSSTGRKDKLTVPVLGGPGGAAVSLPVLKTLPDSSPLSKDIKPEKAAKAGGPPKPKRRKSKGGTTTPS
Length329
PositionHead
OrganismGaeumannomyces graminis var. tritici (strain R3-111a-1) (Wheat and barley take-all root rot fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Magnaporthales> Magnaporthaceae> Gaeumannomyces.
Aromaticity0.06
Grand average of hydropathy-0.409
Instability index51.24
Isoelectric point8.90
Molecular weight34958.15
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats
>MDP29813
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     175.37|      38|      80|      88|     126|       1
---------------------------------------------------------------------------
   88-  125 (64.17/28.21)	PAETGPGAGTGVWVIRKQTRRKVKAADGTPLPDELEVH
  171-  207 (62.57/18.13)	PA.LGHGYATPAAAAAAPRPRGLESKEPTPMPDSLTPA
  274-  305 (48.63/19.00)	PVLGGPG.GAAVSL...PVLKTL..PDSSPLSKDIKPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.75|      14|     164|      68|      83|       2
---------------------------------------------------------------------------
   51-   64 (23.59/15.32)	FNQAVRNQSMLHIV
   70-   83 (24.16/13.13)	FEGRLREMAGLEYM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29813 with Med6 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) YATPAAAAAAPRPRGLESKEPTPMPDSLTPAAGAGAASKAPPPSARTERSAPDARMAEEA
2) YGGEYMDENPITGKPGEFHLSSTGRKDKLTVPVLGGPGGAAVSLPVLKTLPDSSPLSKDIKPEKAAKAGGPPKPKRRKSKGGTTTPS
177
243
236
329










Molecular Recognition Features






MoRF SequenceStartStop




1) AFAIHTRY
2) VLKTLPDSSPLSKDIKPEKAAKAGGPPKPKRRKSKGG
236
288
243
324