<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29802
Description |
Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MEEGVRVDLDKLPIKRLQAIDEAGNEHYPPDTSSDEQRLSAIRRIDFSWVIDKDAKKPKKAAKDTAQQAWPWQGMMESLQQAQQELSIVIDLISTVEANDAVAVAGMLKPKSLPNETLVDTAVSAATKLQRLRHLGRYFKQSAKTMEQQFQKESRFYGSLIRLQQNWKVKRQRFGGSGPGSEGFMFDLVDSSQLDTSVMPRLSSLSLIPIDQDSSGTLSVQVPQKSCRFLSLNFRGDSTNGAESYGYKLKDGISNITPSATENDADNDDVNKSIKNAHSILRNIHESIFEEQVFDMVIRETFVQSQGINVTGMREDFLQLSIGQECSLCLSLAHSGDGIDSEMVGREGRTNSEDASSLVLATMNGKQDPLRKDVIGFPNPRSLEIYLLQLFHANILRKVREKSLNVGRYQSPAQVAGDDYGLLGHFCMTVAHRIFSNKVLLELESVVSGVPYLHLRSLPTWHSRTSSWSLCLKVPQPILATDRIAKPSDNHEPKYKSRSQFNTKVIVKDSQISLMGEGSPSIAGSLSGKSSDGHLINSYNCDLEDLPTMLLQQVASQVIHWLHEEALVLGMNVTRDFLCLYFDLEQGETLGLVAHVDPDDAYGCISWYLTIDHPTEDGKMSADSYEFEKRRFLGYVSLEVLYSTLMDLINLCNAGAHH |
Length | 658 |
Position | Head |
Organism | Oryza brachyantha |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade>
Oryzoideae> Oryzeae> Oryzinae> Oryza.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.357 |
Instability index | 44.31 |
Isoelectric point | 5.57 |
Molecular weight | 73429.19 |
Publications | PubMed=23481403
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140
|
GO - Cellular Component | mediator complex GO:0016592 IEA:EnsemblPlants
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | production of miRNAs involved in gene silencing by miRNA GO:0035196 IEA:EnsemblPlants
regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP29802
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 122.86| 42| 249| 197| 383| 1
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288- 333 (59.71/124.68) IFEEQVFDM.VIREtfVQSQGINVtGMREDFLQLSiGQECSL....CLSLA
385- 431 (63.15/84.12) IYLLQLFHAnILRK..VREKSLNV.GRYQSPAQVA.GDDYGLlghfCMTVA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 113.23| 28| 249| 197| 224| 2
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197- 224 (48.68/31.31) SV...MPRLSSLSLIPI..DQDS.SGTLSVQVPQ
445- 476 (39.00/23.59) SVvsgVPYLHLRSL.PTwhSRTS.SWSLCLKVPQ
504- 527 (25.55/12.86) KV...IVKDSQISLMGE..GSPSiAGSLS.....
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 204.15| 63| 82| 18| 81| 3
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18- 81 (106.37/82.08) QAIDEAG...NEHYPPDTSSDEQrLSAIRRIDFSWVIDKDAKKPKKAAKDTAQQAWPWQGMMESLQQ
100- 165 (97.79/70.26) DAVAVAGmlkPKSLPNETLVDTA.VSAATKLQRLRHLGRYFKQSAKTMEQQFQKESRFYGSLIRLQQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 60.13| 16| 98| 236| 274| 4
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175- 190 (30.85/ 7.17) GGSGPGSEGFMFDLVD
236- 251 (29.27/52.86) GDSTNGAESYGYKLKD
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