<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29800

Description Uncharacterized protein
SequenceMAGKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFTDTSVQSDIKLWPFKVIPGPGDKPMIVVQYKGEEKQFAAEEISSMVLIKMREIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPRVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQDAEKYKSEDEEHKKKVESKNSLENYAYNMRNTIKDEKIASKLPAADKKKIEDAVEAAIQWLDGNQLAEADEFDDKMKELESLCNPIIAKMYQGAGADMGAGGMDDDDAPSGGSGAGPKIEEVD
Length649
PositionUnknown
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.417
Instability index33.09
Isoelectric point5.09
Molecular weight71190.84
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29800
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     366.14|     126|     397|     102|     241|       1
---------------------------------------------------------------------------
  102-  241 (170.80/175.75)	GDKPMIVVqyKGEEKQFAAEEISSMV..LIKMR.EIAEAYLGTTIKNAVVTVpAYfndSQRQATKDAGVIAGLNVM..RIINEPTAAAIAYgLDkkASSVGEKNVliFDLGGGTFDvSLltIEEGIFEVKATAG.DTHLGGEDFDN
  502-  633 (195.34/144.64)	GQKNKITI..TNDKGRLSKEEIEKMVqdAEKYKsEDEEHKKKVESKNSLENY.AY...NMRNTIKDEKIASKLPAAdkKKIEDAVEAAIQW.LD..GNQLAEADE..FDDKMKELE.SL..CNPIIAKMYQGAGaDMGAGGMDDDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.87|      16|      21|      13|      32|       2
---------------------------------------------------------------------------
   13-   28 (33.50/22.98)	DLG..TTYSCVGVWQHDR
   35-   52 (26.37/ 9.17)	DQGnrTTPSYVGFTDTER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29800 with Med37 domain of Kingdom Viridiplantae
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