<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29795

Description Uncharacterized protein
SequenceMGDGRVGGGTNRPAWLQQYELVGKIGEGTYGLVFLARLKQSHPHAAAGVSRRGPPIAIKKFKQSKEGDGVSPTAIREIMLLREINHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHREKLNLPINPYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGIIKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGVEAKATPNPFQLDQLDKIFKVLGHPTVEKWPTLANLPCWQNDQQHIQGHKYENTGLHNIVHLPQKSPAFDLLSKMLEYDPRKRITAAQALEHEYFRMDPLPGRNALLPSQAGEKIVQYPVRPVDTTTDFEGTTSLQPTQPPSGNAPPGSQSVVPRAIQRPMPQPMVNMPRINANMSGFGAAPQAPGVGALNPGNIPMQRGAGAQSHPHQLRRKADQGMGMQNPGYPTQQKRRF
Length475
PositionKinase
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.404
Instability index40.49
Isoelectric point9.37
Molecular weight52915.20
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29795
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.69|      37|      43|     359|     401|       1
---------------------------------------------------------------------------
  359-  401 (54.61/42.06)	QYPVRPVDTTTDFEGTTSlQPTQPPSGNAPPGSqsvVPraIQR
  405-  441 (69.07/36.77)	QPMVNMPRINANMSGFGA.APQAPGVGALNPGN...IP..MQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.81|      32|      47|     241|     273|       4
---------------------------------------------------------------------------
  241-  273 (54.45/35.94)	QG..VEAKATPNPFQLDQLDKIFKVLGHpTVEKWP
  289-  322 (51.36/29.10)	QGhkYENTGLHNIVHLPQKSPAFDLLSK.MLEYDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.50|      21|     404|      40|      60|       5
---------------------------------------------------------------------------
   40-   60 (39.81/22.13)	QSHPH.....AAAGVSRRGP..PIAIKK
  446-  473 (32.69/16.92)	QSHPHqlrrkADQGMGMQNPgyPTQQKR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29795 with CDK8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALLPSQAGEKIVQYPVRPVDTTTDFEGTTSLQPTQPPSGNAPPGSQSVVPRAIQRPMPQPMVNMPRINANMSGFGAAPQAPGVGALNPGNIPMQRGAGAQSHPHQLRRKADQGMGMQNPGYPTQQKRRF
347
475










Molecular Recognition Features






MoRF SequenceStartStop




1) HPHQLRRKADQ
2) PGYPTQQKRRF
448
465
458
475