<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29793

Description Uncharacterized protein
SequenceMQRYTGAGHNAGFGGGVPGRGVVAGGREKGRPEPSSFHGANYPLNSRRQPQVAPYKLKCDKEPLNAKLGAPDFYPQTSNCPEETLTKEYVQSGYKDTVEGIEEAREIVLSHIPYFCKQNIAMKCKEALKKRFRAINESRAQKRKAGQVYGVPLSGSLLTKPGMYPEQMHSNEDTRRKWIEALSQPNRRLLSLAEHIPRGFRRKSLFNYLIRYNVPLLRASWLVKVTYLNQVQLPSDDISSVGPDNLRAHHWTKDVVEYSQQLLDELCSKNGFSAPPSSQEQSLPYLIAGDNLTKLKTGVSPAGADFQEPSLYFKWSYMVRIIQWHLMEQLLVPSLLIEWVFNQLQERDSAKVLEFLLPIVLALVDTITLSQTHIHILVEILIQRISDASPGSLSVKNNPKRSFITPALVDLLQHLILAVPDAFVSLDCFPLPSIVAPDVYSKGALLKITGGGRIVSSRRQNASPHFSCGYAICSVQRRASDLSSVANPNLQVRGSANIVQALDKALVTGNLRAAYTSVFNCLSDTLMEETWIKEVSPCLLSSLMWMGAVELSLVCSVFFICEWATCNFRDCRTSQCQNVKFSGSKDFSQVYMAISLLKNKMDEISNLSSSKSSSQLAMNNHLKSSTQNHSSMKVTAMQNASGFRDNTNSIDENNKKDIFSSPGPLHDIIVCWLDQHEISDASEFKSVDVFMMELIRNGIFYPQTYVRQLIVSGITNWNDTLFGLERKTRHYKILKHLPGFCLFDILEDARIAEDQVLYEIVSAYSSERRLVLSELSSGLDVNVERRVPLSSCLHKQTDLQMDSSDDNHGRVIDQVEEAKLMISGLLNLGYSTLLIESGREEVKRNQKGQTGLIDSEDDSSYAKTGCKDSTRTKRQKLDKNMFPFQGFPLVQSDEEEFWWVKKEHKNDLFTVETIQQSVKQTNGVKATVVQNTQNLAQLAAARIDASQGASTSHMCDNKLSCPHHKPGTDSDILKDVDQMSMLTLAEVGKSLKRLRLLERRSISIWLLKSIKELIEGDETKLSKPNNSISAFTVQHSGKIASRWRFGEDDLLSVLYIMDTCCDFLSSVRLLIWLLSKVHPERSTSGQAGRGVMQPKHKENQLFHLPEAFLFSSLLRYENILLATGLLPEVLSVSMDVHKSGTRQPTSVTFAYARYFFKKYRDAPTVARCENNFRSISDKRLLAELDSGRSITGDSIISGISASEELDMHVHQKLNINAGVLPSMKEIVQRQTEEVLCNLKEKNTTAQKSPSYSKKEDSYQTAHGVVLGLADCIRQNGGANPDGDHSLVVSAVSAIVGNAGNAIAKHLDILGSNYPGVTSSNSSNLIRHTLDVHINSLSLLKETLGERFSRIFEISLAVEASSAVAASFAPPKAHHSQQSSETHDACGNHANDVPGNPTKGFNVKTEKVAAAVSALVVGAIIHGVVSLERMVVVLRLKEGLDILHFLRISKGSSNGVTHSIGNFKTDSSTEVLVHWFKILIGNCKTVYNGVIAEILGDSYVLAFSRLQRTLPLGMVLPPAYSIFAMVLWQPYLYETNTLNHEDIQLYQSLLGVVSDITRHQPFRDVCFRNMHLFYDLLAADVGDLEFAAIIELRSPDECLKALSPLRARLFLNALLDCEIPVTMRDDGTDALEPGCEEVSTKNDVKFPERLLEILNVLQPAKFHWQWVELRLLLDEQSLIEKPKTMPYVKALRSLSPNAENFTLSEREKGLTEIILSRLLVRPDAAPLYSELIHLLGKLQESFVMGIKWFLQGQDVLLGNNSVRQQLVNLTQRKGFPMKTQFWKPWGWSKLVRYANANKSSKRKLEVASVEEREVNGLIDSRKSSTSNSQNVVRNPEARGSTQKYLTQEALAELVLPCIDRSSTEFRFVFASDLIKHMGVISEHIKAAVWNGIKLTSSNHSGNEGFSKPNGRKGIYSSSPNIGKHSPVPNDSTIPSASALRSSIWLRLQFIIRLLPVIIADSNMRQTLASSILSLVGTRVVYEDADSLEPYLDVLFDCPSESLFDRLLCVLHALLGSSRPSWLKTKPGSKPAVKFSRDLSEIDKEVVKSLQCALDCMELPATIRRRIQVAMPILPSSRLSSITCSPPLLSSAALLPFHCSTSTAEPHQQFPLSWIPTNLSSRCKVELPSQDPNMEIDPWTLLEDGTNCPNANSGSNSTNGVTGDHTNLKACSWLKGSVRVRRTDLTYIGSLDEDS
Length2193
PositionKinase
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.232
Instability index47.40
Isoelectric point8.14
Molecular weight244245.35
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29793
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     287.28|      92|     626|      73|     180|       1
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   73-  180 (146.35/123.96)	FYPQTsncpeetLTKEYVQSG...YKDTVEGIE.EAREI.VLSHIPYFCKQNIAMKCKEALKKRFRAINESRAQKRK...........agqvygVPLSGSLLTKPGMypeQMHSNEDTRRKWIE
  700-  813 (140.94/86.12)	FYPQT.......YVRQLIVSGitnWNDTLFGLErKTRHYkILKHLPGFCLFDILEDARIAEDQVLYEIVSAYSSERRlvlselssgldvnverrVPLSSCLHKQTDL...QMDSSDDNHGRVID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     250.43|      84|     627|    1094|    1221|       2
---------------------------------------------------------------------------
  205-  300 (123.23/62.45)	LFNYLIRYNVPLLrASWLvkvtyLNQVQLPSDDISSVG...PDNL...RAHHWTKdvvEYSQQLLDELCsKNGFSAppSSQEQSLPYLIAGDNLT..KLKTGVS
 1109- 1200 (127.20/117.19)	LFSSLLRYENILL.ATGL.....LPEVLSVSMDVHKSGtrqPTSVtfaYARYFFK...KYRDAPTVARC.ENNFRS..ISDKRLLAELDSGRSITgdSIISGIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.73|      34|     831|    1310|    1346|       5
---------------------------------------------------------------------------
 1310- 1346 (54.96/47.16)	GSNYPGVTS.SNSSNLIR..HTldvHINSLSLLKETLGER
 2143- 2179 (54.77/38.15)	GTNCPNANSgSNSTNGVTgdHT...NLKACSWLKGSVRVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     409.39|     126|    1340|     413|     547|       6
---------------------------------------------------------------------------
  418-  547 (203.94/141.40)	AVPDAFVSL...DCFPLPS.IVAPDVYSKgaLLKITGGGRivSSRRQNASPHFSCGYAICSVQRRASDLSSVAN..PNLQVRGSAN..IVQ.ALDKALVTGNLRAAYTSVFNCLSDT....LMEETWIKEVSPCLLSSLMWMG
 1707- 1758 (27.84/ 7.96)	.................................................................................KGLTE..II...LSRLLVRPDAAPLYSELIHLLGKLqesfVMGIKWFLQGQDVLLGN.....
 1760- 1890 (177.61/103.82)	SVRQQLVNLtqrKGFPMKTqFWKPWGWSK..LVRYANANK..SSKRKLEVASVEEREVNGLIDSRKSSTSNSQNvvRNPEARGSTQkyLTQeALAELVLPCIDRSSTEFRFVFASDL....IKHMGVISE....HIKAAVWNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.87|      15|     626|     770|     785|       8
---------------------------------------------------------------------------
  770-  785 (18.06/12.14)	LVLSELSSGLdVNVER
 1414- 1428 (22.81/10.80)	LVVGAIIHGV.VSLER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29793 with Med12 domain of Kingdom Viridiplantae
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