<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29792

Description Uncharacterized protein
SequenceMGSRGDSWETASGVSSSSSGLRATAAAAEEEEGEEEEDAAMANRVFVALPVQQKNGRSTIAWVLRHLAEVASAPAAAVVVVAHVHSPAQMIPMSMGGKFHASKLRPEQVSNYRKYEKEQVEKDLDEYLEQCTRMKVKCEKIVIENEDIASGIIELILLHGVTKLVMGAAADKQYSRKMKSPKSKTALAVMLKANTSCKIWFVCKEHLIYTRESVAPISRKTQSASAIRGSISNLSTWGATTTQSGNNAVNGSIQRSVSEKVVPAASRTSLQLHSRSTLQEAISRLNMEGTSVDSWDSIRRGSFPSSYRASFSTVTEEVLSDSSSSGIPRDDISTLAGSDFPNSAPHHEQGDADSDANLFDKLEEAFAEVEKYRKQAYDESLRRQRTEEDLISYHQKAKKSEDLFLNEAKQRKESEKTLAKANVEIRLLKEEMDVLKHNRDDIKSKLSEVSEQKVTLEQQAVEYGSTVNDLKDTVAASQALINSLQLELEQLKHERDNALKHVEELCAEGQSMVSSSSLSWSTEFSLLELHQATQNFNDAMKIGEGGFGCVYRGLLRNTTVAIKMLRSQNLQGQSQFQQEVAVLSRVRHPNLVTLVGYCSEASGLVYEFLPNGSLEDHLACENNTSPLTWQIRTRIIGEICSALIFLHSDKPHAVIHGDLKPANILLDANFVSKLSDFGISCLLNKSSTVSTSFYQTTNPRGTFAYMDPEFLTTGELTARSDIYSFGIIILRLVTGKPALGIAREVEDALDKGVLKSLVDRSAGDWPFVQAEKLMLLGLQCAELSRRRRPDRMNHVWSVVEPLVKSASVPVEPQSSGHWLDMNHTPFYFICPISQEVMRNPQIAADGFTYEAEAIKGWLDSGHNTSPMTKSILEHHRLIPNLALRSAIEEFMQQQQRSPS
Length899
PositionTail
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.375
Instability index48.93
Isoelectric point5.93
Molecular weight99589.28
Publications
PubMed=23481403

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29792
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.03|      25|      54|     417|     441|       1
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  417-  441 (42.68/28.98)	TLAKANVE..................IRLLKEEMDVLKHNRDD
  455-  497 (31.35/19.45)	TLEQQAVEygstvndlkdtvaasqalINSLQLELEQLKHERDN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.64|      41|     233|      56|     108|       2
---------------------------------------------------------------------------
   58-  104 (61.64/61.50)	STIAWVLRH..LAEVASApaaavVVVAHVHSPAQMI.....PMS..MGGKFhASKL
  625-  674 (58.01/27.31)	SPLTWQIRTriIGEICSA.....LIFLHSDKPHAVIhgdlkPANilLDANF.VSKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.09|      28|      34|     279|     306|       3
---------------------------------------------------------------------------
  279-  306 (48.59/35.54)	QEAISRLNMEGTSVDSWDSIRRGSFPSS
  316-  343 (46.50/33.65)	EEVLSDSSSSGIPRDDISTLAGSDFPNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.26|      20|      34|     181|     200|       6
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  181-  200 (35.59/22.80)	PKS.KTALAVMLKANTS.CKIW
  216-  237 (25.68/14.50)	PISrKTQSASAIRGSISnLSTW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29792 with Med32 domain of Kingdom Viridiplantae
Unable to open file!