<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29790

Description Uncharacterized protein
SequenceMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVRADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPINLVRDASSWQCEHEWRQDLSVVTKWLSGISPYRWLPANSSTSSNIKTFEEKFLTQQPQSSAGWPNILCVCSVFSSGSVQLHWAQWPSQNSAQPRWFSTSKGLLGAGPSGIMAADAIITETGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSLPPSLNPSLWPGFAPLASYLFSLQDYLVSEGAQTKKQVQIDNEATEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSVQPVVLHPIFGSPANFGGQPPMQTVWSTRVNKSIPPSEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGAEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSAIAPPAFSSSGCCLASVWHDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDADFHCLPTIQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIGPDKMTVDPALLLSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSGNSRNMVTSPTNSSPSPSNNQGNQGGVASTTGSSQMQEWVQGAIAKISNNADGAANAAPNPISGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRIPANAQKGSDSSMQKQHLMNGKTEDNPSAVRSGLGAAKVEDGPASRGQLVLAAKGIEENPVGNKSARIGSGNAGQGYTSDEVKVLFLILVDLCKRTATLQHPLPASQVGSGNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDLGPLDNMPHLKINGSTSRHLSDMEEDGDSSFGIQNLWPRKRRLSERDAAFGLKTSVGLGSFLGVMGSRRDVITAVWKTGLDGGWYKCIRCLRQTCAFAQPGAPNTTNELEAWWISRWTHACPMCGGSWVKVV
Length1169
PositionTail
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.165
Instability index48.36
Isoelectric point6.69
Molecular weight126578.01
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29790
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.90|      13|     113|     716|     728|       1
---------------------------------------------------------------------------
  716-  728 (26.05/14.85)	HFITRLRRYASFC
  833-  845 (26.85/15.48)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.63|      22|      30|     467|     496|       2
---------------------------------------------------------------------------
  467-  493 (30.52/36.09)	PNdvrqLAQiVYSAH...GAEVA.VAFLRGG
  500-  525 (33.11/14.62)	PN....FDQ.VDSYHvnvGSAIApPAFSSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     223.43|      67|      84|     166|     232|       5
---------------------------------------------------------------------------
  166-  232 (122.15/71.31)	GWPN.ILCVCSVFSSGSV..QLHWAQWPSQNSAQPRWFSTSKGLL..GAGPSGIMAADAIITETGALHVAGV
  248-  319 (101.28/57.76)	GLGNgIQATAKINATSSLppSLNPSLWPGFAPLASYLFSLQDYLVseGAQTKKQVQIDNEATEAASIHCCPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.21|      13|      15|     870|     882|       6
---------------------------------------------------------------------------
  870-  882 (24.27/16.09)	KQHLMNGK.TEDNP
  886-  898 (22.06/13.93)	RSGLGAAK.VEDGP
  902-  915 (16.88/ 8.88)	GQLVLAAKgIEENP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.15|      24|      45|     990|    1032|       7
---------------------------------------------------------------------------
  990- 1014 (38.92/57.76)	LGPhMQNMPRPRGADAAGLLLRELE
 1038- 1061 (44.24/16.91)	LGP.LDNMPHLKINGSTSRHLSDME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.67|      26|     339|     397|     432|       9
---------------------------------------------------------------------------
  367-  393 (46.92/23.48)	YMSPYD.PDEGPSITGWRVQCwESSVQP
  400-  426 (45.75/29.28)	FGSPANfGGQPPMQTVWSTRV.NKSIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.64|      13|      15|     758|     770|      10
---------------------------------------------------------------------------
  740-  750 (18.06/ 8.81)	SGSGNSRNM..VT
  758-  770 (23.93/14.46)	SPSNNQGNQGGVA
  775-  787 (21.64/12.26)	SSQMQEWVQGAIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     224.25|      66|     530|      83|     149|      11
---------------------------------------------------------------------------
   83-  149 (117.81/75.43)	ALLVANFHGRITIWTQPTKGPiNLVR............DASSWQCEHEWRQDLSVVTKWLSG..ISPYRWLPANSSTSSNI
  605-  684 (106.45/63.74)	ALLDADFHCLPTIQQRQQHCP.NLDRikcrllegtnaqDVRALVLDMQARLLLDMLGKGIESalINPSTLLPEPWQASSDM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.76|      27|    1105|      17|      43|      12
---------------------------------------------------------------------------
   17-   43 (50.69/28.86)	GKLNAIACASETCA....RIP.SSNSSPPFWI
 1120- 1151 (46.07/25.51)	GWYKCIRCLRQTCAfaqpGAPnTTNELEAWWI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.49|      15|     392|      44|      58|      13
---------------------------------------------------------------------------
   44-   58 (29.90/18.40)	PIHILNPER.PTECSV
  438-  453 (24.60/13.78)	PMPTTSDERsSSECSV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29790 with Med16 domain of Kingdom Viridiplantae
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