<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29790

Description Uncharacterized protein
SequenceMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVRADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPTKGPINLVRDASSWQCEHEWRQDLSVVTKWLSGISPYRWLPANSSTSSNIKTFEEKFLTQQPQSSAGWPNILCVCSVFSSGSVQLHWAQWPSQNSAQPRWFSTSKGLLGAGPSGIMAADAIITETGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSLPPSLNPSLWPGFAPLASYLFSLQDYLVSEGAQTKKQVQIDNEATEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSVQPVVLHPIFGSPANFGGQPPMQTVWSTRVNKSIPPSEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGAEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSAIAPPAFSSSGCCLASVWHDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDADFHCLPTIQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIGPDKMTVDPALLLSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSGNSRNMVTSPTNSSPSPSNNQGNQGGVASTTGSSQMQEWVQGAIAKISNNADGAANAAPNPISGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRIPANAQKGSDSSMQKQHLMNGKTEDNPSAVRSGLGAAKVEDGPASRGQLVLAAKGIEENPVGNKSARIGSGNAGQGYTSDEVKVLFLILVDLCKRTATLQHPLPASQVGSGNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDLGPLDNMPHLKINGSTSRHLSDMEEDGDSSFGIQNLWPRKRRLSERDAAFGLKTSVGLGSFLGVMGSRRDVITAVWKTGLDGGWYKCIRCLRQTCAFAQPGAPNTTNELEAWWISRWTHACPMCGGSWVKVV
Length1169
PositionTail
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.165
Instability index48.36
Isoelectric point6.69
Molecular weight126578.01
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29790
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.90|      13|     113|     716|     728|       1
---------------------------------------------------------------------------
  716-  728 (26.05/14.85)	HFITRLRRYASFC
  833-  845 (26.85/15.48)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.63|      22|      30|     467|     496|       2
---------------------------------------------------------------------------
  467-  493 (30.52/36.09)	PNdvrqLAQiVYSAH...GAEVA.VAFLRGG
  500-  525 (33.11/14.62)	PN....FDQ.VDSYHvnvGSAIApPAFSSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     223.43|      67|      84|     166|     232|       5
---------------------------------------------------------------------------
  166-  232 (122.15/71.31)	GWPN.ILCVCSVFSSGSV..QLHWAQWPSQNSAQPRWFSTSKGLL..GAGPSGIMAADAIITETGALHVAGV
  248-  319 (101.28/57.76)	GLGNgIQATAKINATSSLppSLNPSLWPGFAPLASYLFSLQDYLVseGAQTKKQVQIDNEATEAASIHCCPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.21|      13|      15|     870|     882|       6
---------------------------------------------------------------------------
  870-  882 (24.27/16.09)	KQHLMNGK.TEDNP
  886-  898 (22.06/13.93)	RSGLGAAK.VEDGP
  902-  915 (16.88/ 8.88)	GQLVLAAKgIEENP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.15|      24|      45|     990|    1032|       7
---------------------------------------------------------------------------
  990- 1014 (38.92/57.76)	LGPhMQNMPRPRGADAAGLLLRELE
 1038- 1061 (44.24/16.91)	LGP.LDNMPHLKINGSTSRHLSDME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.67|      26|     339|     397|     432|       9
---------------------------------------------------------------------------
  367-  393 (46.92/23.48)	YMSPYD.PDEGPSITGWRVQCwESSVQP
  400-  426 (45.75/29.28)	FGSPANfGGQPPMQTVWSTRV.NKSIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.64|      13|      15|     758|     770|      10
---------------------------------------------------------------------------
  740-  750 (18.06/ 8.81)	SGSGNSRNM..VT
  758-  770 (23.93/14.46)	SPSNNQGNQGGVA
  775-  787 (21.64/12.26)	SSQMQEWVQGAIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     224.25|      66|     530|      83|     149|      11
---------------------------------------------------------------------------
   83-  149 (117.81/75.43)	ALLVANFHGRITIWTQPTKGPiNLVR............DASSWQCEHEWRQDLSVVTKWLSG..ISPYRWLPANSSTSSNI
  605-  684 (106.45/63.74)	ALLDADFHCLPTIQQRQQHCP.NLDRikcrllegtnaqDVRALVLDMQARLLLDMLGKGIESalINPSTLLPEPWQASSDM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.76|      27|    1105|      17|      43|      12
---------------------------------------------------------------------------
   17-   43 (50.69/28.86)	GKLNAIACASETCA....RIP.SSNSSPPFWI
 1120- 1151 (46.07/25.51)	GWYKCIRCLRQTCAfaqpGAPnTTNELEAWWI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.49|      15|     392|      44|      58|      13
---------------------------------------------------------------------------
   44-   58 (29.90/18.40)	PIHILNPER.PTECSV
  438-  453 (24.60/13.78)	PMPTTSDERsSSECSV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29790 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SSGSGNSRNMVTSPTNSSPSPSNNQGNQGGVASTTGS
739
775










Molecular Recognition Features






MoRF SequenceStartStop




NANANA