<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29789

Description Uncharacterized protein
SequenceMSDSSSDSDDEEHGPSKEDCFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSRRRAIFDQYVRTCAVEERKEKRAAQRAAMEAYKQLLEEASEDINSNKDYQEFKRKWGTDPRFEALDRKARESLFSEKVKSIEEKVQSMRNAVKTDFKSMLRESKDITSTSRWTKVKENFRNDARYKAMKHEEREDAFNEYIAELKSAEKEAEQAAKAKSDEQAKLKERERETRKRKEREEQEMERVKLKIRRKEAVSSYQALLVEIIKDPKASWTESKPKLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERRVRDFRALLSEVITLEIAARTTTDEGKTAINSWTEAKGLLRSDPRYNKLPSKDRESIWRRYADDMARKLKQSDSKEKPDTDGKQQRRSSDPPRRR
Length404
PositionUnknown
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-1.320
Instability index47.26
Isoelectric point9.36
Molecular weight47609.97
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29789
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     413.44|      87|     130|      17|     110|       1
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   24-  101 (117.40/71.99)	..........MLKERGVA...............PFSKWEKELPKIVF....DPRFKAI.PSYSRRRA..IFDQY....VRTCAVEERKEKRA..AQRAAME.A.YKQLLEEASEDINS
  102-  164 (79.10/40.22)	NKDYQEFKR......................................kwgtDPRFEAL.DR.KARES..LFSEK....VK..SIEE...KVQ..SMRNAVK.TdFKSMLRE.SKDITS
  165-  232 (84.19/41.61)	..................................TSRWTKVKENFRN....DARYKAM..KHEERED..AFNEY....IAELKSAEKEAEQA..AKAKSDE.Q.AKLKERERETRKRK
  233-  341 (97.32/51.30)	EREEQEMERvKLKIRRKEavssyqallveiikdPKASWTESKPKLEK....DPQGRAVnPDLGKGDAekLFRDH....VKDLYERRVRDFRAllSEVITLEiA.ARTTTDEGKTAINS
  342-  386 (35.43/11.97)	.....................................WTEAKGLLRS....DPRYNKL.PS.KDRES..IWRRYaddmARKLKQSDSKEK............................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29789 with Med35 domain of Kingdom Viridiplantae
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