<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29788

Description Uncharacterized protein
SequenceMAAAASSSPYTGDSPEAPLSGEKVYVAVGAESRDTLLWALHKFGPQGTAFVLLHVYSPPKFLHIRGAKIPPSQLPEQELIAHKKMHLQSISDNLDQYQLTCAQQKVQAERLVVEADDVAQGLVDLISARNVSMLVMGDADDKHYAKKMKVLKSKTAQAVEQHADPFCKIWFICKGTLVYCRKAAPFSHDMMQECRQSSTCAQSSVERSSSLSEMWRASNTWLQKLNLDQHAETTSSYRYSGKEKEGTKECNESDNELHNILMELERVKQEAYEEKCRCEKAEQKLFEALQKAQASENLYFGELKQRNEIEVKLATTMEEVERLARTADELAAKLKEECKKILVLEKRSAHSDRIIKDVMLQRDKAVREAESIRVKNGESTATVDRTVHITELSISEIKEATNNFDQSLKVGESVYGSVYKGFLRHTNVAVKKLNPENTQSLSQFNQEVEILSRVRHPNLVTLIGACKDARALVYEYMPNGSLDDRLACKDNSRPLNWQLRIRIASNICSALIFLHSNKPHSIVHSDLKASNILLDGNNVAKLSGFGVCRMLTDEFKATTTLYRHTHPKGSFVYIDPEYAISGDLTPLSDVYSFGIVLLRLLTGRSGFGLLKDMQRAVQKGCLQAILDSSAGNWPLMHSEQLARVGLRCCEIRRKNRPDLQTEVWTVLEPMLRSASSMLCSLSFKSVSEDYGNVPSYFICPIQQDVMRDPLIAADGFTYEADAIREWLDSGHCTSPMTNLDLPHRDLLPNHALRSAIQEWLQTNTD
Length765
PositionTail
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.395
Instability index44.64
Isoelectric point6.56
Molecular weight86037.12
Publications
PubMed=23481403

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29788
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.16|      16|      20|     363|     380|       1
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  363-  380 (22.09/19.34)	DKAVREAE.SI.RVKngEST
  384-  401 (18.07/ 8.51)	DRTVHITElSIsEIK..EAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.81|      40|      49|     515|     563|       2
---------------------------------------------------------------------------
  512-  552 (64.67/72.53)	IFLHSNKPHSIVHSDLKASnILLDGNNVAKLSGFGVC..RMLT
  561-  602 (66.14/47.61)	LYRHTHPKGSFVYIDPEYA.ISGDLTPLSDVYSFGIVllRLLT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.47|      40|     127|     318|     357|       3
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  318-  357 (65.20/52.40)	EEVERLARTADELAAKLKEECK..KILVLEKRSAHS..DRII.KD
  446-  490 (56.28/44.09)	QEVEILSRVRHPNLVTLIGACKdaRALVYEYMPNGSldDRLAcKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.43|      27|     387|      21|      48|       5
---------------------------------------------------------------------------
   21-   48 (43.05/41.70)	GEKVYVAV.GAESRDTLLwALHKFGPQGT
  411-  438 (43.38/34.09)	GESVYGSVyKGFLRHTNV.AVKKLNPENT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.47|      35|      58|     223|     257|       6
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  223-  257 (57.39/36.73)	QKLNLDQHAETTSSYRYSGKEKEGTKECNESDN....EL
  265-  303 (50.08/31.15)	ERVKQEAYEEKCRCEKAEQKLFEALQKAQASENlyfgEL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29788 with Med32 domain of Kingdom Viridiplantae
Unable to open file!