<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29787

Description Uncharacterized protein
SequenceMAVASARSSLPSSSSPLLPQSLPGLERMLVHGGSTGSRSLREIDEEEEDDGGGGYGGGQIYVAVGKDLKDGKANIQWAASKLQLQLQPQQSDVKKLVLLHVHQPADRIMSGLCKVPAKQLEEKELKAYRTIEKDDMNKLLDQYLSYCKVFPKVQAETLVIEKNNVANGIVEFIDKHHITKLVMGTSSFSVKRQVPKSKVAGTVHQLAKPYCQILYICKESLACTREANQFAEKGDSPRSSSGSSLSDQPEFPSRSVSLPSSYPGFQKSLPPRCNSVSYPSSRYLENDVENISPAGRHPVDVAPKGSSLNPRHQSDGVSSPTLKDLDIMDDGSSGPVSISSSEEHQHSMVEANRQNEMFEKWQQDRNELERSRKEALEGRQKAERDLFEASKMFRARENSLCKGKDEVEERLTREKARLEKEHLQICNELQKANEQRVELERKLMHANSLMEELQHVQREMQHEKDNAVKEAEKMRLINCNNVFCSTGAVALTEFSYTEITEATNDFDESKKIGHGGCGSVYKGFLRHTTVAIKKFNREGVTGEKEFNDEVETLGRMRHPNLVTLIGVCRDAKALVYEFLPNGSLEDRLRCKNQTDPLPWRMRIRIAAEICTALIFLHSNKPKGIAHGDLKPDNVLLGDNFTAKLGDFGISRSLNLTDTTITPYHRTSQIKGTLGYMDPGYIASGELTAQYDVYSFGIVLLRLLTGKSPLGLPSEVETALNNEMLQEIIDASAGEWPPEYTKRLAILALRCCRYDRKERPDLAKEAWSVLQAMVNCPDNTNKCDTPSFFICPMTQETMRDPHIAADGFTYEGEAIRDWLQRGHKISPMTYLTLTHHELIPNNALRFAIQEWQLKQKL
Length856
PositionTail
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.579
Instability index44.07
Isoelectric point6.43
Molecular weight96055.86
Publications
PubMed=23481403

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29787
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.96|      16|     259|       7|      23|       2
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    7-   23 (27.38/20.61)	RS.SLPsSSSPLLPQSLP
  254-  270 (28.58/16.53)	RSvSLP.SSYPGFQKSLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.51|      42|      45|     629|     673|       5
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  629-  673 (59.03/56.55)	LKPDNVLLGDnFTAK..LGDFGISrSLNLTdTTITPYHRTSQIKGTL
  676-  719 (66.48/47.02)	MDPGYIASGE.LTAQydVYSFGIV.LLRLL.TGKSPLGLPSEVETAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.50|      46|      48|     377|     424|       6
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  377-  424 (69.88/44.83)	EGRQKAERDLFE.ASKMFRAreNSLCKGKDEVEERLTREK..ARLEKEHLQ
  427-  475 (65.62/36.56)	NELQKANEQRVElERKLMHA..NSLMEELQHVQREMQHEKdnAVKEAEKMR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.49|      31|      40|     483|     513|       7
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  483-  513 (51.94/27.73)	FCSTGAVALTEFSYTEITEATNDFDESKKIG
  524-  554 (51.55/27.48)	FLRHTTVAIKKFNREGVTGEKEFNDEVETLG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29787 with Med32 domain of Kingdom Viridiplantae
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