<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29786
Description |
Mediator of RNA polymerase II transcription subunit 4 |
Sequence | MPSSFDEALSLLNTLQTQLFEAVAELQETLDLQDARARLAREARAKDTSILAFTKKLREAHQVLDRLVDDYADYRRDPKRPRGAAAADGPEPVSDGDFGSSLHSKLDLDDVLTYAHRISYTTFAPPEHGAGLPLRGALPPAPQENEMRMSQLYQFADLDVGVPKKSLEAKERTASEGEATPLFEPTPPREEARPHMMPHMLPPNVLPGWPNGPLDIPLPPPGWKPGDPITLPPDGILAGVKGEEPRASVPQMSVAVPAMVPKAQEPIQVRHVDLDINISSSSDEYSSDVGSSEEDDED |
Length | 298 |
Position | Middle |
Organism | Oryza brachyantha |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade>
Oryzoideae> Oryzeae> Oryzinae> Oryza.
|
Aromaticity | 0.05 |
Grand average of hydropathy | -0.574 |
Instability index | 52.79 |
Isoelectric point | 4.64 |
Molecular weight | 32543.05 |
Publications | PubMed=23481403
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364141
|
GO - Cellular Component | mediator complex GO:0016592 IEA:EnsemblPlants
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP29786
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 153.85| 28| 29| 181| 208| 1
---------------------------------------------------------------------------
125- 156 (38.82/12.66) PPE.HGAG..................lPLrgaLPP...APQENEMRMSQLYQFA
157- 201 (37.60/12.08) DLD.V..GvpkksleakertasegeatPL...FEP...TPPREEARPHMMPHML
202- 231 (44.49/15.37) PPN.VLPG...............wpngPL...DIP...LPP.PGWKPG.DPITL
232- 264 (32.95/ 9.86) PPDgILAG..................vKG...EEPrasVPQMSVAVPAMVPKAQ
---------------------------------------------------------------------------
|