<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29782

Description Uncharacterized protein
SequenceMAGQKLSGAPPELALVVFHTHGPYSAFCVQRSGWTKDMNVFLSWLSGISFSGGGFSEAAISEGLAEALMILQGSPSNSQNHQSLEVQKHCILVAASNPYPLPTPVYRPLVQSSDLKDNNDGAKESCLADAETVAKSFAQCSVSLSVISPKQLPTLKAIYNAGKRNPRAADPSVDHAKNPHFLVLLSDNFLEARSALTRPLPGNLVSNHPIAKMDTTATSVPIPTSNANPSVNGPILARQPNGVVGIPTANIKVEPTTIPPMVSAPAFSHVTPVSNGVSQGLSTVQSPSPSLISQDTNLGNDSVQEHKPLINPIQQSVRPVGPANVNILNNLSQHRSVANIISSGIPSISGTGQSIGTQQMVQNTGFGSNTSNNAVSSSLSNIQGNMSLSGPPVTQGGPMAATQLGQGGINTNQNVMSSLGAATIPSAPAMMPTPGMAQQAGVNTLGVTNSSAMNMPIVQHPNAQQQQQQPPPKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASETLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVPTQQPQMQQQLQQQQNQLQQQNQLQQQHQLQPQNQLQQQQQQLQQHLQQQQLQQHMQMQPQGHQLQQQQQMQQIQQQQQQQQQMQQMQQQQQQMQQMQQQQQQMQQMQQQQQQMQQMQQQQQQMQQMQQQQQQMQQMQQQQQPQQLQQQQQPQMVGAGMGQQQPQMVGAGIGQQQPQMVGTGMGQQQPQMVGVGMGQQQPQMVGTGMGQQFMHGRGQQQFMQQGKMAQQPGSMSGSYMS
Length835
PositionUnknown
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.594
Instability index60.73
Isoelectric point9.02
Molecular weight91044.91
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29782
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     184.90|      19|      19|     675|     693|       1
---------------------------------------------------------------------------
  653-  670 (38.27/ 7.56)	QMQPQGHQLQQQQ.QMQQI
  675-  693 (48.88/11.87)	QQQQQMQQMQQQQQQMQQM
  695-  713 (48.88/11.87)	QQQQQMQQMQQQQQQMQQM
  715-  733 (48.88/11.87)	QQQQQMQQMQQQQQQMQQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     133.46|      22|      22|     759|     780|       2
---------------------------------------------------------------------------
  738-  756 (44.49/12.68)	QPQQLQ...QQQQPQMVGAGM........G
  759-  780 (48.05/14.40)	QPQMVGAGIGQQQPQMVGTGM........G
  783-  812 (40.93/10.97)	QPQMVGVGMGQQQPQMVGTGMgqqfmhgrG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     412.96|      84|     167|     225|     308|       4
---------------------------------------------------------------------------
   51-  100 (44.28/14.61)	...............................................SGGGFSE..AAISEGLAE..ALMILQ..gSPSNSQ....NHQSLE.....VQKHCI...........lvaaSNPYP
  145-  229 (86.66/36.52)	SVISP.........KQLPTLK.....AIYNA.G...KRNPRAADPSVDHAKNPHfLVLLSDNFLE..ARSALT...RPLPG..........NL....VSNH.PiakmdttatsvpiptSNANP
  230-  318 (139.84/64.01)	SVNGP....ILA..RQPNGVV.....GIPTA.NI..KVEPTTIPPMVSAPAFSH.VTPVSNGVSQ..GLSTVQ...SPSPSL....ISQDTNLGNDSVQEHKP..........linpiQQSVR
  319-  396 (64.18/24.90)	PV.GPanvnILNnlSQHRSVAniissGIPSI.SG..TGQSIGTQQMVQNTGFGS.NTS.NNAVSS..SLSNIQgnmSLSGPP....VTQ....G.............................
  397-  472 (78.01/32.05)	...GP....MAA..TQ.LGQG.....GINTNqNVmsSLGAATIP...SAPAMMP..TP...GMAQqaGVNTLG...VTNSSAmnmpIVQHPNAQQQQ.QQPPP....................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29782 with Med25 domain of Kingdom Viridiplantae
Unable to open file!