<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29781

Description Uncharacterized protein
SequenceMDGGNWRPTDPSAVAAAARGIEPXXXPPAPSGGDWRAQLQPEARTRIVNKIMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNTQGIQNQNPPGPVPGLPPQGSNPAQSSAIPLMSQQQARQPNSTSVQASLTNLGQSLPGVNQTATLQNMSGIPQNAMNNGLTQGASQDIYATQRQMVGRQQQQQQQQSQNQLIYQQQQMLMKQKLQQQNSLMQPHIQQQQSLLQSTQMQSSQQQMMQISSGLQPGQSIPQTQPMVQSASQGGIQQNPLNSVPQSVQSLLQQPAQSSIRQQQHSQSSIHPQPSLQQAQPTQQPNVPLQQQFGQQQNLQQNQLIGQQNGSVDMPQQQRLPVQSNLLNMQQTPQMLNQQSMPSHQQQQLGSQANISTLQQQQQQQQQQQNQQQQQLLGTVPNIQRLHMLQTKAAVQQSQQQPHGQQSSLGLMQPQSQHNQLQQSQQHLMSQFQPQPNQLQQLGMPQQQPIQQRLPTSASMLLQPNNIDQQKQFIQAHRGLQEVSSSTSVDSTAQTGHAGTGTGDWQEEAYQMVKNLKDQYFAELNELYNKISLKLQHIDSMVPPQKPTDQYDKMKSFKVMLERTMQVLQLNKGSIQPAIRDKIPAYERQIISILNSQRRKPVQTQGQTQFQQSAGQGPTSNIPQQQPSLQQHDNHTNQMPQASMPSMSTGLQSSGAAGIQHVPASPATNFGVPTTQQNVTNGPQATSSLDVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQGSSSMLSHSQVGTMQPNANSMQANANSLQQMKQQQQEHLMQSQQMKRQMFQHLQQKQMLQQQLPTQQQLQKQQQSQMQVPQHHSGNDANELKVRQGTAVKPVIYQQHLAQRNNYYNQQMKQGSAFPISSPQNLQVSSPQISHHSPQVDQHNLLPSQLKTGTPLQSANSPYMPSPSPPVAPSPIPVDSDKPLSNLSSSLTNTGQAPHQQTAMAPQTQSIAVNTPGISASPLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRATQRQSLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGTGTSKKMKRDTSAMPLNVSSAGSVNDSFKQACIIDTPELQSTATSRVKWQKTEINHALVEEIHEINQQLIDTELHVCEDDAESFGATSEGAEGTVIKCTFTAVAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKFSMLLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWENCVGA
Length1324
PositionTail
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.760
Instability index72.41
Isoelectric point9.26
Molecular weight144907.58
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29781
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     482.60|      57|      57|     342|     398|       1
---------------------------------------------------------------------------
  202-  252 (62.79/13.09)	A....TQRQMVGR.QQ......Q........QQQQQSQ....NQL..IYQQQ..QML.MK.QK..lqQQNSLMQPHIQQQQS
  253-  297 (53.15/ 9.63)	L....LQST...Q.MQSS....Q........QQMMQIS....SGL..QPGQSIPQ...........tQPMVQSASQGGIQQN
  299-  356 (62.11/12.84)	LnsvpQSVQSLLQ.QPAQSSIRQ........QQH..SQ....SSI.......HPQPS.LQ.QAqptqQPNVPLQQQFGQQQN
  357-  412 (89.71/22.74)	L....QQNQLIGQ.QNGSVDMPQ........QQRLPVQ....SNL..LNMQQTPQML.NQ.QSmpshQ.....QQQLGSQAN
  416-  466 (57.33/11.13)	L....QQQQ..QQ.QQQQQNQQQ........QQLLGTV....PNIqrLHMLQTKAAV.QQsQQ....QPH.......GQQSS
  497-  546 (58.32/11.49)	L....QQLGMPQQ.Q......PI........QQRLPTS....ASM..L.LQ..PNNI.DQ.QK.qfiQAHRGL.QEVSSSTS
  758-  819 (47.31/ 7.54)	L....QHGSMSGAlQQGSTG.PM........QGTLNAQqqgsSSM..LSHSQVGTMQpNA.NS...mQANANSLQQMKQQQ.
  820-  870 (51.88/ 9.17)	......QEHLMQS.QQMKRQMFQhlqqkqmlQQQLPTQ....QQ...LQKQQQSQM.............QVP.QHHSG...N
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     162.27|      37|      57|     652|     688|       2
---------------------------------------------------------------------------
  164-  193 (35.82/ 8.82)	LG....QSLPG.....V.....NQTATLQN..MSGIPQ......naMNNGLT
  652-  687 (54.75/18.52)	LNSQRRKPVQTQGQTQF.....QQSAGQGP..TSNIPQ........QQPSL.
  712-  753 (38.26/10.07)	SGAAGIQHVPASPATNFgvpttQQNVTNGPqaTSSLDV........TQGS..
  950-  983 (33.44/ 7.60)	ANSPYMPS.PSPP............VAPSP.....IPVdsdkplsnLSSSLT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.58|      11|      28|       3|      13|       3
---------------------------------------------------------------------------
    3-   13 (24.40/15.13)	GGNWRPT.DPSA
   32-   43 (19.19/10.00)	GGDWRAQlQPEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.49|      51|     514|      67|     121|       4
---------------------------------------------------------------------------
   67-  121 (79.81/50.40)	LNEL.QKIAVRFeEKIYTAATSQ..SDYLRKI.SLK.MLsmeTKTQQ....NPGNTQ.GIQNQNP
  582-  642 (63.68/30.80)	LNELyNKISLKL.QHIDSMVPPQkpTDQYDKMkSFKvML...ERTMQvlqlNKGSIQpAIRDKIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.72|      23|     203|     688|     710|       5
---------------------------------------------------------------------------
  688-  710 (44.58/19.17)	QQHDNHTNQMPQAS.MP.S.MSTG..LQ
  894-  918 (31.29/10.84)	QRNNYYNQQMKQGSaFPiS.SPQN..LQ
  922-  948 (28.85/ 9.32)	PQISHHSPQVDQHNlLP.SqLKTGtpLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.43|      15|      26|    1081|    1095|       8
---------------------------------------------------------------------------
 1081- 1095 (24.87/15.60)	GNGSRAAVGEDLVAM
 1110- 1124 (24.56/15.32)	GTGTSKKMKRDTSAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.53|      16|     341|     137|     153|       9
---------------------------------------------------------------------------
  137-  153 (26.04/13.80)	QSSAIPLMSQQQArQPN
  480-  495 (31.49/13.19)	QQSQQHLMSQFQP.QPN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29781 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HMLQTKAAVQQSQQQPHGQQSSLGLMQPQSQHNQLQQSQQHLMSQFQPQPNQLQQLGMPQQQPIQQRLPTSASMLLQPNNIDQQKQFIQAHRGLQEVSSSTSVDSTAQTGHAGTGTGDWQEEA
2) IISILNSQRRKPVQTQGQTQFQQSAGQGPTSNIPQQQPSLQQHDNHTNQMPQASMPSMSTGLQSSGAAGIQHVPASPATNFGVPTTQQNVTNGPQATSSLDVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQGSSSMLSHSQVGTMQPNANSMQANANSLQQMKQQQQEHLMQSQQMKRQMFQHLQQKQMLQQQLPTQQQLQKQQQSQMQVPQHHSGNDANELKVRQGTAVKPVIYQQHLAQRNNYYNQQMKQGSAFPISSPQNLQVSSPQISHHSPQVDQHNLLPSQLKTGTPLQSANSPYMPSPSPPVAPSPIPVDSDKPLSNLSSSLTNTGQAPHQQTAMAPQTQSIAVNTP
3) MDGGNWRPTDPSAVAAAARGIEPXXXPPAPSGGDWRAQLQPEARTRIVNKIMETL
4) NLQQNQLIGQQNGSVDMPQQQRLPVQSNLLNMQQTPQMLNQQSMPSHQQQQLGSQANISTLQQQQQQQQQQQNQQQQQLLGTVPNI
5) QKLQQQNSLMQPHIQQQQSLLQSTQMQSSQQQMMQISSGLQPGQSIPQTQPMVQSASQGGIQQNPLNSVPQSVQSLLQQPAQSSIRQQQHSQSSIHPQPSLQQAQPTQQPNVPLQQQFGQQ
6) RKISLKMLSMETKTQQNPGNTQGIQNQNPPGPVPGLPPQGSNPAQSSAIPLMSQQQARQPNSTSVQASLTNLGQSLPGVNQTATLQNMSGIPQNAMNNGLTQGASQDIYATQRQMVGRQQQQQQQQSQNQLI
445
648
1
356
234
93
567
1007
55
441
354
224










Molecular Recognition Features






MoRF SequenceStartStop




NANANA