<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29779
Description |
Mediator of RNA polymerase II transcription subunit 14 |
Sequence | MAGELGQQTVELGSVVRRAAEDSYLALRELVEKSRVEAEGKNGQQRSDTEKKIDLLKFIDRTRQRMLRLHVLAKWCQQVPLVHYCQQLASTLSSHETCFTQTADSLFFMHEGLQQARAPIFDVPSAIEILHSGSYRRMPKCVEEIGTQNTLFQDEQKPTLKKLNTLVRTKLLETSLPKEVSEVSVTDGIANVQVDGEFKVLITLGYRGHFSLWRILHMELLVGEKTGPIKLEETRRYALGDDIERRMAVADNPFMILYTILHELCISLVMDTVIRQTNALRQGRWKDAIKSELISDIHSGGGQGGNSALMQLGQEGELDSSGSRIPGLKINYWLEEKTNASAELDSSPFIKIEAGQDMQIKCQHSSFVLDPFTDKEADLSIDLSCIDVEAVILKAIACNRHTRLLEIQRELIKNVQMSQSRTEVILKREVHGVGFQKKAHRRDSDDCSTNEMLQARAYGQSYIHLGINIRNGRFLLQSPGNILPPSAVLESEEALNKGITTATDVFVSLRTRSILHLFAATGSSLGLKVYSQSQVTLKIPKSILYGSDFMVMGFPQCANAYYLLMQLNNSFQPVFHLLEIQSNEGDKNNADASTDAKEVIRFIRIDINKLKIDEDVQIGSLFDKDKLLALPNVEDRPQRLSGTFALLPARPSFSSVVDEVFGFDTGSPKTENQRLPSYNLPSSHSSYQVGLRGANGGAGSPVQDYGSLQSNINSAKVTSSISLNNYLLNNSKHAQSTTALFGSVPAGSGNISSSRSEGASRKRSLSEFLQNIPLLKQSDRPSKRRNMSEFMLDGPLKAHSPNMQPGTTLTYGKLLEEVNNCITANIYSSVLLHVIKHCSICIKYAQLTAQMDSLNIPHVEEAGLRTPSSNLWLRLPFAHDASWKHICLRLGKAGSMSWDVRINDPHYGALWKLHGGSTSTEWGSGIRVANTSEVDSHISFDDDGVLLTYNTVEADSVQRLVSDLQRLSNARAFSCGMRRLIGVKLDDELVENQAAAETKLYPRRKASSDRLSEQMRKTFRIEAVGLMSLWFSYGAVPMVYFVVEWEAGKSGCTMRVSPDQLWPHTKFFEDFVNGDEVASFLDCIRLTAGPLLALGGAIRPAKMPVTVPAVYSVVPKQNNVLSSVGSTNSSLSSSVHNMSVPQGAAVAQANSHLQTSSMLSAAGRTAPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNALEPNLLSARHTGPQLNASASTVSGSQQLAPTTNRFGGAPGVARPTSSVGNQVATSLSRAGNAMMASGFSSGIAGAPAHLSPANNIPAHMKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPDLLKEILGSILKDNEGALLNLDHEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQQQASQSNNGQEELTASEISEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFIKLIAWKKNLSQAHGDNATAQRARIELCLEKHPRLVSDDYTLSSSSKSNIHHDRANNSVEFALTFVLDQALVPQMSISGGAAWLPYCVSVRVRYTFGDNSHIAFLAMDGSHSGRACWLQHEDWERCKQRVSRAVETMNGSAAVGDMSQGRLRMVAEMVQKQLQLSLVQLRDGPGSAVS |
Length | 1681 |
Position | Tail |
Organism | Oryza brachyantha |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade>
Oryzoideae> Oryzeae> Oryzinae> Oryza.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.205 |
Instability index | 49.28 |
Isoelectric point | 8.31 |
Molecular weight | 184829.44 |
Publications | PubMed=23481403
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU365082
|
GO - Cellular Component | mediator complex GO:0016592 IEA:UniProtKB-UniRule
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:UniProtKB-UniRule
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP29779
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 1407.54| 470| 575| 256| 765| 1
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256- 765 (689.96/555.90) ILYTILH.ELCISLVMDTVirQTNALRQGRWKDA....IKSELISDIHSGGGQGGNSALMQLGQEGELdSSGSRI..PGLKiNYWLEEKTNASAELDSSpfIKIEAGQDMQikcQHSSF....VLDPFTDKEADlSIDLSCIDVEAV.ILKAIACNrHTRLL..EIQRELIKNvqMSQSRTEVILKREVHGVGFQKKaHRRDSDDCSTNEMLQARAYGQ.SYIHLGINIRNGR...FLLQSPGNILPPSAVLesEEALNKG.ITTATDVfVSLRTRSILHLFAA.TGSSLGL...KVYS....QSQVTLKIPKS.ILYGSDFMVMGFPQCANayylLMQLNNSFQPVFHLLEI.QSNEGDKNNADASTDAKEVIR...FIRIdINKLKIDEDVQigsLFDKDKLLALPNVEDR..PQrLSGTfalLPArPSFSSVVDE..VFGFDTGSPKTENQRLPSYNLPSSHSSyqvgLRGANGGAgsPVQD.YGSLQsniNSAKVTSSISlNNYLLNNSKHAQSTTAL.FGSVPAGS.GNISSSRSEGASRKRSL
831- 1339 (717.58/459.09) LLHVIKHcSICIKYAQLTA..QMDSLNIPHVEEAglrtPSSNLWLRLPFAHDASWKHICLRLGKAGSM.SWDVRIndPHYG.ALWKLHGGSTSTEWGSG..IRVANTSEVD...SHISFdddgVLLTYNTVEAD.SVQRLVSDLQRLsNARAFSCG.MRRLIgvKLDDELVEN..QAAAETKLYPRRKASSDRLSEQ.MRKTFRIEAVGLMSLWFSYGAvPMVYFVVEWEAGKsgcTMRVSPDQLWPHTKFF..EDFVNGDeVASFLDC.IRLTAGPLLALGGAiRPAKMPVtvpAVYSvvpkQNNVLSSVGSTnSSLSSSVHNMSVPQGAA....VAQANSHLQTSSMLSAAgRTAPGLVPSSLLPFDVSVVLRgpyWIRI.IYRKKFSVDMR...CFAGDQVWLQPATPPKggPS.VGGS...LPC.PQFRPFIMEhvAQGLNALEPNLLSARHTGPQLNASAST....VSGSQQLA..PTTNrFGGAP...GVARPTSSVG.NQVATSLSRAGNAMMASgFSSGIAGApAHLSPANNIPAHMKGEL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 48.44| 14| 19| 766| 781| 7
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766- 781 (21.14/17.54) SEFLQNIPLLKQSdrP
788- 801 (27.30/15.43) SEFMLDGPLKAHS..P
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