<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29775

Description Uncharacterized protein
SequenceMDPGPNRDKITKSIDDALQLSKTYGFSGIETGHVVIFFMLSVITKLIDCTLEDCGFQSGLSEAQESIYAIEGPQDMDLDVKGVSTEKQNEHRAQLRRKNTAMALDAMLMMVADRKIQSFLRLIFLNMPEKFSTLSQRLSLVEAHKMELETLLTANRKIDDLLMNIRRVSSSAYQPNNKRLLGVLGNMKYSGSMLGQFTGAGRAACWVIFDIYVENAIDGKHLSAISAIEVLKEMTKTLQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDARLCMLLALIPLSIGAILKEETDVSGVQGGKNLPKRLGLVSSLQDLVQYSGLLVPPSAVVNAANAAASKAAIFKANYKSGGGNPGMMGQNDSSTKPVGNMLHLIVEACISRNLIDTSAYLWPGYVVSSGHLKDATLSQESPWLNFMQGAPLSGPLIDALIATPASSTTELDRLYNIVLNGSEEEKSAAAKILCGASFVCGWNIQEHVVRMVIRLLSLPLPSSSSTQGSVSHYLSQMSTLNALLLGISYGDAIHIISLYGMVPDVAAALMPICEVFGSIPPPSNHKPAIVGEISVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLLLMHNNHIDFANSSTSNRNCNNIGPSNEVPAQPLYIDSFPKLRAWYFQNQACIASTLSGLCNKNPVHQVANKILSMICRKMNKPGISSGNLSSTSSSSVSGSSVSTSDDSYQRPTVPAWEFLEAVPFVLEAVLTACAHGRFSSRDLTTSLRDLVDFLPASIAAIVSYFLAEITRGIWKMVPMNGTEWPSPGASLHSIEAEIKEILASAGIQIPSCYPRGVPPMLPLPMAALVSLTITFKLDKSLEYIHAISGQALENCTGGSSWPSMPIIGALWTQKVRRWHDFIVLSCLRSPFGRDKDAVAQLIQSCFSSFLLSSCGGSDFTANRGVGALMGDSITGQGLQLPMAPGFIYLRSCRTFQDTYFVSEVILKQVIEWADKLANGFSSIGPPQLKSGRTPLSSAACMAHQVAMLGGGLLCVAGGPLLVQVLYEETLPTLLLSARDESMKDPGPVSSTLQGYAMANMLFFCGSLLWGAERTSPMLKLSFLSRRPRVVGTHMDFMAGVLDGHILLGCDHGTWKAYVSRFVFLVVKFVPSWLRDIKLDTLKKIASGLRSWNEHDLALALLERGGPQAISTVVETLL
Length1192
PositionTail
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy0.135
Instability index48.50
Isoelectric point7.48
Molecular weight129535.65
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29775
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.66|      68|     154|     711|     803|       1
---------------------------------------------------------------------------
  711-  799 (101.95/126.91)	VSGssvstsddsyqrptvpawefLEA.VPFVLEAV...LTACaHGRFSSRDLTTSLRDLVDF.....LPAS...IAAIVSYFLAEITRG.IWKMVPMNGTEW
  806-  886 (97.71/65.02)	LHS....................IEAeIKEILASAgiqIPSC.YPRGVPPMLPLPMAALVSLtitfkLDKSleyIHAISGQALENCTGGsSWPSMPIIGALW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.89|      12|     498|     469|     620|       3
---------------------------------------------------------------------------
  548-  563 (20.41/98.55)	CEVFGsippPSNHKPA
  632-  643 (24.49/73.94)	CNNIG....PSNEVPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.07|      36|     498|     571|     620|       4
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  119-  158 (51.13/25.92)	FLRL.IFLNMPEKFsTLSQRLSLVeahKMELE...TLLTANRKI
  581-  620 (55.94/44.99)	LLRLwKFYKPPQEY.CLAGRGGSV...RLELTldyLLLMHNNHI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.30|      11|      71|     649|     659|       6
---------------------------------------------------------------------------
  649-  659 (23.92/13.01)	DSF..PKLRAWYF
  721-  733 (19.39/ 9.22)	DSYqrPTVPAWEF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29775 with Med33 domain of Kingdom Viridiplantae
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