<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29774

Description Uncharacterized protein
SequenceMQRYAGGTNASGFSGGGVGGGGRDSSRLDASPYSASNYPLSSRRQQQLAPYKLKCDREPLNNKLGPPDFYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSHIQCKPDVIKCKEALKKRLRAINESRAQKRKAGQVYGVPLFGSLLIKPGVYPEQRPCNEDTRRKWAEALSQPNKRLRSLSEHVPHGYRRKSLLDVLTRYNVPLLRATWFVKVTYLNQPQVRSTSVSSSAGGSDNHRSNQWTNDVIEYLQQLLDEFCLKEVPPSFREQSSPALISGATQVKMKSEATPAVGDTDEPLVHFKWWYMVRLIQWHLTEELLVPSVLIEWLLNQFQERVAIEALELLLSVALGIIDSITLSQTYVRMFVEILVRRLSDAPAVDNPKRASISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVAPDVYSRGALLKITGSGGIAGSKRQDAYRYLSCGYAVCSIQKRTYDLATVANPNFQAHGAAKVVQALDKALVTGNLTMAYSSLFNDLSDPLMEERWIKEVSPCLQSSLMWIGTVELSLICSVLFLCEWATCDYRDCRTSLFRNVKFTGRRDLSQIHLAVSILKNKMDEINNLSRSKSSSRTAVNNTVKGSLLNDTSLAASTVAGSSGLRNNAKNVEEKDKKDVFESPGPLHDIIVCWLDQHEVSSSAGFKRVDVLIIELIRSGIFCPQAYVRQLIISGITDKNDTMLDMERKRRHHRILKQLPGSSLFEILEEDRVTEEQQLYEMMSTYSSERRLVLSELSTGQSFDANSRGEYVSSSCVPKASDLLLASGGDKHGRVPEQVEDVKTLVSSMLRFPNPHSVEPEHCQIKTNPQGSSASTLTQVDTVDVKNDCEDCARTKRQKLDDRATTLQGFPLIQSDEEDIWWVRKGTKLHESFKVEPAQKSIKQTSRGRAKVVRKTQSLAQLAASRIEGSQGASTSHLCESKVGCSHHKPSMDVDNIKDVDHMKIVDLSEVGKSLKRLRLLERRSVSVWLLKSVRQLIEANEMTASKASNSISSFSSQSDDKTVLKWKLGDDELLSILYILDICCDLASGARFLVWLLTKIRSGMATSGQIGRSATHIKNRENQVCQVGEALVFSSLLRYENILLATDLLPEVLSVSMNRNFVLATARHPASGAFAYTRYFLKKYGDVASVARWQKSFRTTCDQRLLAELDNGRSVDGDLVSSSGVSAGEEIDEQVRQKLNVRNSRIVPNMKEIIQRQTEEKKGFAAPKSPSVEREDSYQTAHDIVLGLVDCIRQNGGASLDGDPSIVASAVSAIVVNAGHAIAKHLDLSGGNYQGVSSMGSSLSSVRHILHIHITSLCLLKDALGDRLSRVFEIALAVEASSAITATFAPPKIQRNQFQPSPETHDVYGNHTNELSNTGKGFVGRTTKVAAAISALVVGAIIHGVVNLERMVAVLKIKEGLDILQLLRGLRSSTNGVSRSTGTFKMENSVEVLVHWFRILLGNCRTVYDGLIADILGESYVLALSRLQRMLPLSMVLPPAYSIFAMVLWKRYTFNREDVQLYQSLSNAINDITMHQPFRDICFRNTHQLYDLLSADVGDSEFAAMLEMHSADKGSKATTFIPLRARLFLNSLVDCRTPGAISGDGTSASESGEAKENELKLSDRLIQLLDTLQPAKFHWQWVELRFLLDEQALLEKVAAGNTSVAEAIQSLSPNAESFALSDSEKGFTEIILSRLLARPDAAPLYSEVVHLLGKLQESLVVDVKWLLQGQDALLGRKSTRQQLVHIAQRKGLSTKTQIWKPWGWSSLLSDVIASKSTKRKLEVTSIEEGEVVDESADAKRPSKATPHNVDRSFEGIRSINKYLTEKALSELMLPCIDRSSAEFRSIFAGDLVKQMGTISEHIKAIIARNGTKQSGLVPSGTEAASNKSSTRKGIRGGSPNIGRRTPVGNDPTPPSASALRATVWLRLQFIIRLLPLIMADRSMRHTLASAILGLLAARIIYEDADLPLPPTNTTILRRDVDSLLEPPLDVLLDRPGESLFERLICVFHALLGNGKPSWLKSKSVSKSTTRTPRDFPAFNSEAAEGLQSTLDHLELPGIIKRRIQAAMPVLPPSRHPCVSCQPPQLSLAALSPLQSSTSTSGPQQKGTSTSWVPTNISIRNKAAFATQDPEMEVDPWTLLEDGTSCPSMSSGSNNSSAVAGDHGNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2198
PositionKinase
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.247
Instability index48.37
Isoelectric point8.64
Molecular weight242689.12
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29774
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     312.36|      86|     669|    1148|    1240|       1
---------------------------------------------------------------------------
 1148- 1233 (140.70/88.84)	KKYGDVASVARWQKSFRTTCDQRLLAELDNGRSVDGDLVSS.SGVSAGEEIDEQVRQKLNVRNSRIVPNMKEIIQRQTEEKKGFAAP
 1841- 1903 (86.02/51.98)	...................CIDRSSAEFRS..IFAGDLVKQ.MG.TISEHI.KAIIARNGTKQSGLVPSGTEAASNKSSTRKGIRGG
 1916- 1981 (85.64/54.53)	DPTPPSASALRATVWLRLQFIIRLLPLIMADRSMRHTLASAiLGLLAARIIYEDADLPLPPTNTTI.....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.32|      30|     668|     331|     363|       2
---------------------------------------------------------------------------
  331-  363 (41.52/35.78)	WLLNQFqeRVAIEALELLLSVALGIIDSITlSQ
  994- 1023 (51.80/32.76)	WLLKSV..RQLIEANEMTASKASNSISSFS.SQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.37|      23|     773|     835|     860|       4
---------------------------------------------------------------------------
  835-  857 (40.80/22.82)	QGSSASTLTQVDTVDVKNDCEDC
 1579- 1601 (38.57/20.86)	KGSKATTFIPLRARLFLNSLVDC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.69|      18|     945|     543|     560|       5
---------------------------------------------------------------------------
  543-  560 (36.79/22.12)	SVLFLCEWATCDYRDCRT
 1455- 1472 (33.89/19.81)	SVEVLVHWFRILLGNCRT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.09|      21|     945|     419|     439|       6
---------------------------------------------------------------------------
  419-  439 (38.00/24.91)	PSFVAPDVY.SRGALLKITGSG
 1366- 1387 (36.09/23.25)	PSPETHDVYgNHTNELSNTGKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.48|      44|     392|     216|     281|       8
---------------------------------------------------------------------------
  216-  259 (77.14/37.27)	VKVTYLNQPQVRSTSVSSSAGGSDNHRSNQWTN..DVIEYLQQLLD
  609-  654 (66.34/ 6.48)	VKGSLLNDTSLAASTVAGSSGLRNNAKNVEEKDkkDVFESPGPLHD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.39|      21|     945|    1115|    1135|       9
---------------------------------------------------------------------------
 1115- 1135 (36.50/25.71)	LPEVLSVSMNRNF.VLATARHP
 2061- 2082 (33.90/23.27)	LPGIIKRRIQAAMpVLPPSRHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     288.35|      93|    1586|      16|     113|      10
---------------------------------------------------------------------------
   16-  113 (151.24/108.99)	GGVGGGGRDSSrlDASPYSASNYPLSSRRQQ...QLAPYKLKCDREPLNNKLGPPDFYPQTpnCPEETLTKEYVQSgYKETVEGI.....EEA.REIVLSHIQCKPD
 1605- 1706 (137.10/83.42)	GAISGDGTSAS..ESGEAKENELKLSDRLIQlldTLQPAKFHWQWVELRFLLDEQALLEKV..AAGNTSVAEAIQS.LSPNAESFalsdsEKGfTEIILSRLLARPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.81|      48|    1867|     265|     319|      12
---------------------------------------------------------------------------
  265-  319 (78.54/61.64)	EVPP.SFREQ..SSPALISGAtqvkmkSEATPAVGDTDEpLVHFKWWY.MVRLIQWHLT
 2138- 2189 (71.28/40.56)	EVDPwTLLEDgtSCPSMSSGS......NNSSAVAGDHGN.LKACSWLKgAVRVRRTELT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29774 with Med12 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GLVPSGTEAASNKSSTRKGIRGGSPNIGRRTPVGNDPTP
2) MQRYAGGTNASGFSGGGVGGGGRDSSRLDASPYSASNYPLSS
3) PEMEVDPWTLLEDGTSCPSMSSGSNNSSAV
1881
1
2135
1919
42
2164










Molecular Recognition Features






MoRF SequenceStartStop




NANANA