<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29774

Description Uncharacterized protein
SequenceMQRYAGGTNASGFSGGGVGGGGRDSSRLDASPYSASNYPLSSRRQQQLAPYKLKCDREPLNNKLGPPDFYPQTPNCPEETLTKEYVQSGYKETVEGIEEAREIVLSHIQCKPDVIKCKEALKKRLRAINESRAQKRKAGQVYGVPLFGSLLIKPGVYPEQRPCNEDTRRKWAEALSQPNKRLRSLSEHVPHGYRRKSLLDVLTRYNVPLLRATWFVKVTYLNQPQVRSTSVSSSAGGSDNHRSNQWTNDVIEYLQQLLDEFCLKEVPPSFREQSSPALISGATQVKMKSEATPAVGDTDEPLVHFKWWYMVRLIQWHLTEELLVPSVLIEWLLNQFQERVAIEALELLLSVALGIIDSITLSQTYVRMFVEILVRRLSDAPAVDNPKRASISSVIAELLRYMVLAVPDTFVSLDCFPLPSFVAPDVYSRGALLKITGSGGIAGSKRQDAYRYLSCGYAVCSIQKRTYDLATVANPNFQAHGAAKVVQALDKALVTGNLTMAYSSLFNDLSDPLMEERWIKEVSPCLQSSLMWIGTVELSLICSVLFLCEWATCDYRDCRTSLFRNVKFTGRRDLSQIHLAVSILKNKMDEINNLSRSKSSSRTAVNNTVKGSLLNDTSLAASTVAGSSGLRNNAKNVEEKDKKDVFESPGPLHDIIVCWLDQHEVSSSAGFKRVDVLIIELIRSGIFCPQAYVRQLIISGITDKNDTMLDMERKRRHHRILKQLPGSSLFEILEEDRVTEEQQLYEMMSTYSSERRLVLSELSTGQSFDANSRGEYVSSSCVPKASDLLLASGGDKHGRVPEQVEDVKTLVSSMLRFPNPHSVEPEHCQIKTNPQGSSASTLTQVDTVDVKNDCEDCARTKRQKLDDRATTLQGFPLIQSDEEDIWWVRKGTKLHESFKVEPAQKSIKQTSRGRAKVVRKTQSLAQLAASRIEGSQGASTSHLCESKVGCSHHKPSMDVDNIKDVDHMKIVDLSEVGKSLKRLRLLERRSVSVWLLKSVRQLIEANEMTASKASNSISSFSSQSDDKTVLKWKLGDDELLSILYILDICCDLASGARFLVWLLTKIRSGMATSGQIGRSATHIKNRENQVCQVGEALVFSSLLRYENILLATDLLPEVLSVSMNRNFVLATARHPASGAFAYTRYFLKKYGDVASVARWQKSFRTTCDQRLLAELDNGRSVDGDLVSSSGVSAGEEIDEQVRQKLNVRNSRIVPNMKEIIQRQTEEKKGFAAPKSPSVEREDSYQTAHDIVLGLVDCIRQNGGASLDGDPSIVASAVSAIVVNAGHAIAKHLDLSGGNYQGVSSMGSSLSSVRHILHIHITSLCLLKDALGDRLSRVFEIALAVEASSAITATFAPPKIQRNQFQPSPETHDVYGNHTNELSNTGKGFVGRTTKVAAAISALVVGAIIHGVVNLERMVAVLKIKEGLDILQLLRGLRSSTNGVSRSTGTFKMENSVEVLVHWFRILLGNCRTVYDGLIADILGESYVLALSRLQRMLPLSMVLPPAYSIFAMVLWKRYTFNREDVQLYQSLSNAINDITMHQPFRDICFRNTHQLYDLLSADVGDSEFAAMLEMHSADKGSKATTFIPLRARLFLNSLVDCRTPGAISGDGTSASESGEAKENELKLSDRLIQLLDTLQPAKFHWQWVELRFLLDEQALLEKVAAGNTSVAEAIQSLSPNAESFALSDSEKGFTEIILSRLLARPDAAPLYSEVVHLLGKLQESLVVDVKWLLQGQDALLGRKSTRQQLVHIAQRKGLSTKTQIWKPWGWSSLLSDVIASKSTKRKLEVTSIEEGEVVDESADAKRPSKATPHNVDRSFEGIRSINKYLTEKALSELMLPCIDRSSAEFRSIFAGDLVKQMGTISEHIKAIIARNGTKQSGLVPSGTEAASNKSSTRKGIRGGSPNIGRRTPVGNDPTPPSASALRATVWLRLQFIIRLLPLIMADRSMRHTLASAILGLLAARIIYEDADLPLPPTNTTILRRDVDSLLEPPLDVLLDRPGESLFERLICVFHALLGNGKPSWLKSKSVSKSTTRTPRDFPAFNSEAAEGLQSTLDHLELPGIIKRRIQAAMPVLPPSRHPCVSCQPPQLSLAALSPLQSSTSTSGPQQKGTSTSWVPTNISIRNKAAFATQDPEMEVDPWTLLEDGTSCPSMSSGSNNSSAVAGDHGNLKACSWLKGAVRVRRTELTYIGSLDDDS
Length2198
PositionKinase
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.247
Instability index48.37
Isoelectric point8.64
Molecular weight242689.12
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29774
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     312.36|      86|     669|    1148|    1240|       1
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 1148- 1233 (140.70/88.84)	KKYGDVASVARWQKSFRTTCDQRLLAELDNGRSVDGDLVSS.SGVSAGEEIDEQVRQKLNVRNSRIVPNMKEIIQRQTEEKKGFAAP
 1841- 1903 (86.02/51.98)	...................CIDRSSAEFRS..IFAGDLVKQ.MG.TISEHI.KAIIARNGTKQSGLVPSGTEAASNKSSTRKGIRGG
 1916- 1981 (85.64/54.53)	DPTPPSASALRATVWLRLQFIIRLLPLIMADRSMRHTLASAiLGLLAARIIYEDADLPLPPTNTTI.....................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.32|      30|     668|     331|     363|       2
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  331-  363 (41.52/35.78)	WLLNQFqeRVAIEALELLLSVALGIIDSITlSQ
  994- 1023 (51.80/32.76)	WLLKSV..RQLIEANEMTASKASNSISSFS.SQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.37|      23|     773|     835|     860|       4
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  835-  857 (40.80/22.82)	QGSSASTLTQVDTVDVKNDCEDC
 1579- 1601 (38.57/20.86)	KGSKATTFIPLRARLFLNSLVDC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.69|      18|     945|     543|     560|       5
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  543-  560 (36.79/22.12)	SVLFLCEWATCDYRDCRT
 1455- 1472 (33.89/19.81)	SVEVLVHWFRILLGNCRT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.09|      21|     945|     419|     439|       6
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  419-  439 (38.00/24.91)	PSFVAPDVY.SRGALLKITGSG
 1366- 1387 (36.09/23.25)	PSPETHDVYgNHTNELSNTGKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.48|      44|     392|     216|     281|       8
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  216-  259 (77.14/37.27)	VKVTYLNQPQVRSTSVSSSAGGSDNHRSNQWTN..DVIEYLQQLLD
  609-  654 (66.34/ 6.48)	VKGSLLNDTSLAASTVAGSSGLRNNAKNVEEKDkkDVFESPGPLHD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.39|      21|     945|    1115|    1135|       9
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 1115- 1135 (36.50/25.71)	LPEVLSVSMNRNF.VLATARHP
 2061- 2082 (33.90/23.27)	LPGIIKRRIQAAMpVLPPSRHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     288.35|      93|    1586|      16|     113|      10
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   16-  113 (151.24/108.99)	GGVGGGGRDSSrlDASPYSASNYPLSSRRQQ...QLAPYKLKCDREPLNNKLGPPDFYPQTpnCPEETLTKEYVQSgYKETVEGI.....EEA.REIVLSHIQCKPD
 1605- 1706 (137.10/83.42)	GAISGDGTSAS..ESGEAKENELKLSDRLIQlldTLQPAKFHWQWVELRFLLDEQALLEKV..AAGNTSVAEAIQS.LSPNAESFalsdsEKGfTEIILSRLLARPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.81|      48|    1867|     265|     319|      12
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  265-  319 (78.54/61.64)	EVPP.SFREQ..SSPALISGAtqvkmkSEATPAVGDTDEpLVHFKWWY.MVRLIQWHLT
 2138- 2189 (71.28/40.56)	EVDPwTLLEDgtSCPSMSSGS......NNSSAVAGDHGN.LKACSWLKgAVRVRRTELT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29774 with Med12 domain of Kingdom Viridiplantae
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