<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29773

Description Uncharacterized protein
SequenceMAPSSMDYWLGFFRGAGDNIFDAIDAAITVAASAHPAALRSRRDAIAERLYTAHLASRAPGAPPQLPHPEGAASVPSLCSSDRAEVITDDGGVVPRREDPVAAETERIKAVLLNDQEKSEAALLELLQRLQQLELTVDTLTVTEIGKAVSSYRKHSSKPIRHLVRLLIEGWKCIVDEWMSSRDAIVDHTPQSMHPSGLERHDRGLTSPSMDDGALFATPSTSIRLSEENQGSKFFDGTDDDGSMKSNSGKDNSRMYTRNQEPARRPLPPMTQQYDPDQSWKQEQSAMRQSRPQELSNGQTREQFIATMLARPSNPEPVPGRTQPRPKQHQDASPAQGKSLPFDKPASHHDENSVRAKLELAKNAKLELSNNAKLEVTKRKLQEGYQEFDNAKKLRTVQVVDPQNLPKQGNRNWQPNGKPRNNSNLNNNRNWSR
Length433
PositionUnknown
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.885
Instability index54.80
Isoelectric point8.39
Molecular weight48235.22
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29773
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.06|      15|      17|     317|     331|       1
---------------------------------------------------------------------------
  317-  331 (30.69/18.79)	PVPGRTQP..RPKQHQD
  334-  350 (24.37/13.34)	PAQGKSLPfdKPASHHD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.20|      22|     125|      64|      91|       2
---------------------------------------------------------------------------
   64-   91 (36.84/35.71)	PQLPHPEGaasvpsLCSSDRAEV..ITDDG
  190-  213 (39.35/24.22)	PQSMHPSG......LERHDRGLTspSMDDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.06|      18|      21|     251|     268|       3
---------------------------------------------------------------------------
  251-  268 (32.84/19.76)	DNSRMYTRNQEPARRPLP
  275-  292 (33.22/20.08)	DPDQSWKQEQSAMRQSRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.63|       8|      17|     404|     413|       4
---------------------------------------------------------------------------
  404-  413 (13.44/16.01)	NLpkQGNRNW
  424-  431 (18.18/11.45)	NL..NNNRNW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29773 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AIVDHTPQSMHPSGLERHDRGLTSPSMDDGALFATPSTSI
2) LSEENQGSKFFDGTDDDGSMKSNSGKDNSRMYTRNQEPARRPLPPMTQQYDPDQSWKQEQSAMRQSRPQELSNGQTREQFIATMLARPSNPEPVPGRTQPRPKQHQDASPAQGKSLPFDKPASHHDENSVRAKLELAKNAKLELSNNAKLEVTKRKLQEGYQEFDNAKKLRTVQVVDPQNLPKQGNRNWQPNGKPRNNSNLNNNRNWSR
184
225
223
433










Molecular Recognition Features






MoRF SequenceStartStop




NANANA