<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29772

Description Uncharacterized protein
SequenceMDAMVNEMSKAYEELVAAAKAAAEAEEQPAGGENTAAAKDAASEALRQRLDLFHAACDNAEGLVDSIRRRYVGFVDGDNGSSAASSSSSSSSSSPPSSVSPCATLALPDDAIRRILLYLPSAASAARASLVSRCWRNAWATLPELRFHDVTDLARVSAALRLRVAPVHLLHIESNDPAPEKIAAAGVFAKLTVLRLSHFRLDRQNQRDLGGAVSSEGCPSLQQLFLSKSHVSSDLAIRSESLLCVRLLDLQGLERLKVVAPMLKELGVFRCFNVTLPIADISAPAVEDLQWIGVFDRLLVQFGVMPRLWRLAVWGLLYIPSTIQHLQSLSLLKHFVAARHVHLTLVYPPGMVNYVLLVKAVKMLPAVEIFSLILRIRRHAFGPCLFHLLKMCTGIRELNLDFDDRDRIKAEQIPCSYGCTCHEPHDWETMDIRLNFLQKVEINNMSGADCKIFFVNRLLRWVPMLKTITLTFDHSVPVSKEVLPNINRLINFRQAKGFLMTSEMATRCLLFPADQASRAHSCFLPTLNSGIILNIHA
Length537
PositionTail
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy0.135
Instability index54.65
Isoelectric point8.35
Molecular weight59403.32
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29772
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     144.83|      44|      79|     148|     193|       1
---------------------------------------------------------------------------
  148-  193 (64.99/44.06)	HDVTDLARVSAALrLRVaPVHLLHIESNDPAPEKIAAA.....GVFAKLTV
  230-  269 (44.69/22.83)	HVSSDLAIRSESL.LCV...RLLDLQGLERL..KVVAPmlkelGVF.....
  273-  300 (35.15/16.06)	..................NVTLPIADISAPAVEDLQWI.....GVFDRLLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.40|      30|     199|     116|     145|       2
---------------------------------------------------------------------------
  116-  145 (54.16/32.05)	LL.....YLPSAASAARA.SLVSR..CWRNAWATL...PEL
  316-  351 (36.46/19.30)	LL.....YIPSTIQHLQSlSLLKHfvAARHVHLTLvypPGM
  356-  385 (36.78/19.53)	LLvkavkMLPAVEI...F.SLILR..IRRHAFG.....PCL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.71|      18|      18|      11|      28|       3
---------------------------------------------------------------------------
   11-   28 (30.13/22.02)	AYEELVAAAK.AAAEAEEQ
   30-   48 (26.58/18.58)	AGGENTAAAKdAASEALRQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29772 with Med32 domain of Kingdom Viridiplantae
Unable to open file!