<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29771

Description Uncharacterized protein
SequenceMKAANFKRIMQLIDDNLGLSKIFGFSTSEPGVFVVEFTLCMLWQLVDAALDDEGLLELIPDKKSHWPTRLDDMSSFEGTFSEQRIDKTDKLQKMNNVITIELIGHLLHDKVITHILSLARENMQSQWSAFANRLQLIITKSSTLRTSTIALKSFQQLHLDVYNIFRGNKHWLHRKLHPIVASNPLSSPNGRCLGASYSALWIPIDMYLEDCLDGSIAATNSIEILSGLVKALQAVNRATWHDAFLALWIASLRLVQREREPIEGPVPHLDTRLCMLLSITTLAIADIIKEEDSKLNNNWKEKKESDDLRKELMLSLQTLGDYESLLVPPPCIISAANQAASKAAMFVSGTNINSGYMENATDRTTHCSGNMWHLIVESCISRNLLETSVYYWPGYINSHVNSISHALPSQLAAWSSFIKGAPLTQSLVNVLVATPASSLAEVEKLFEVAVNGSDEDKVFAATILCGATLLRGWNFQEHTVRLVVKLLSSYDPVDLSGGESQLVKQGPMLNVIVTGISPVDYVPIFSFHGLIPELAAALMAICEVFGCLPPSVSWPLRTGEEISAHTVFSNSFILLLRLWKFNHPPLEYCVMGDGAPVGSQLTPEYLLLLRNSQVLSARSSIKNRNNQKQLPVTSNPSSEHPIFMDSFPKLKVWYRQHQACLASTLSGFAQGAPLHKNVDSLLNLMFRKTNKGSTSIGSLSGSSSISNSSGPGVDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLTDFLPASLATIVSYFSAEVTRGVWKPAFMNGTDWPSPAVNLSMVEEHIKKIVAATGVDVPRLVTGGSTSGTLPLPLAAFVSLTITYKLDNASERFLNLAGPALENLAASCPWPSMPIVAALWTQKVKRWTDFLVFSASRTVFHHNNDAVVQLLRSCFTATLDVSSSATSVCSCGGIASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVPRHRLKKASRHVMRHGQVSLSSAMTQVKVAASLGATLVWLSGGTALVQSLLQEMLPSWFLSVQGAGRRRGGXXXXXXXYFAVYSGMFAWGIDPASVSRRRGRVMWSHLEFLAGALDGKISLGCDLSLWRAYVSGFLGLVGEGTPCWVRXXXXXXXXGLAAGLRRWKEDELAVALLRRAGPEAMGAAAEMIL
Length1184
PositionTail
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy0.130
Instability index40.76
Isoelectric point7.37
Molecular weight127797.09
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29771
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     520.70|     165|     487|      11|     185|       1
---------------------------------------------------------------------------
   11-  185 (255.40/186.41)	QLIDDNLGLSKIF.GFStsePGVFVVEFTL.CMLWQLVDAALDDEGLLELIPDKKShWPTRLDDMSSFEGTFSEQRIdKTDKLQKMNN.VITIELIGH..LLHDKVITHILSLARE.NMQSQWSAFANR...LQLIITkSSTLRTSTIALKSFQQLHldVYniFRGNKHWLHRKLHPIVASNPL
  501-  674 (265.31/163.09)	QLVKQGPMLNVIVtGIS...PVDYVPIFSFhGLIPELAAALMAICEVFGCLPPSVS.WPLRTGEEISAHTVFSNSFI.LLLRLWKFNHpPLEYCVMGDgaPVGSQLTPEYLLLLRNsQVLSARSSIKNRnnqKQLPVT.SNPSSEHPIFMDSFPKLK..VW..YRQHQACLASTLSGFAQGAPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.16|      32|      72|     719|     755|       2
---------------------------------------------------------------------------
  719-  755 (43.42/47.98)	WPQlPAWEiLEAVPFVVDAALTACshGRLFPReLATG
  793-  824 (57.73/37.99)	WPS.PAVN.LSMVEEHIKKIVAAT..GVDVPR.LVTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.64|      15|     579|     366|     380|       3
---------------------------------------------------------------------------
  366-  380 (32.68/22.12)	HCSGNM.......WHLIVESCI
  946-  967 (23.96/14.11)	HCSGGLspvapgiLYLRIFRCI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29771 with Med33 domain of Kingdom Viridiplantae
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