<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29767

Description Uncharacterized protein
SequenceMEIQEAAGAGEDGLEMEAPSVSTVAIAVNGSKSSRHALKWALDKFVPEGRVLFRILHVRPIIKMVPTPMGNFIPITQVREDVATAYRKDVEWQANNMLLPYKKMCAQRKVEAEAVLLESDDVPTALSEEINKFNVSKLVLGSSSSIFRRKHKGSKTASRICECIPSFCTAYVVSKGKLSSVHSATSDNVEAPESISSSTVSSPSSRSLASSVPSEWGDTYGSANVTFHQSSLSSQRDQALANMNKLYNRTGSPSGSGRTEISYHDDTVLTSSHSVNSEAQFSSSSSGKSIYKSFNRDHSFDNSDQASVSDIATNLKHSHDQEYLKLEIDRLRVKLRHLQKLNEIAQNESFDASQKLHKLGIQDIEDEIKLKESELTEEKVRRLIRKKEREQQEVARREDQFKSDSAEREAKQNNDIQEGDENKTEERIFGRCFDEYNRYTWEEIQASTSSFSVDLMIGKGSYGTVYKAKFHHTVAAVKVLNSPEGCGTQQLQQELEVLGKIRHPHLLLMLGACPEHGCLVYEYMENGSLDDMLQRRNNTPSLTWFDRLRIAWEVATALMFLHSSKPEPIIHRDLKPANILLDRNLVSKIGDVGLSTLLPSMDQYLSTMIKNTAPVGTFCYIDPEYQRTGVVSMKSDVYALGIVILQLLTAKSPMGIAHVVETALEEGHFLDILDASAGQWPQKEAQELAVLALKCAEMRRRDRPDLSDHVLPALERLKDVAAKAREMALHGQTPPPSHFICPILQEVMVDPYVASDGYTYDRKAIELWLSMNDKSPMTNLRLPHKNLIPNHSLRSAIMDWRSKG
Length804
PositionTail
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.456
Instability index46.12
Isoelectric point6.26
Molecular weight90039.95
Publications
PubMed=23481403

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29767
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.91|      30|      38|      80|     109|       1
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   80-  109 (52.94/41.03)	EDVATAYRKDV.EWQANNMLLPYKKMCAQRK
  120-  150 (42.98/31.85)	DDVPTALSEEInKFNVSKLVLGSSSSIFRRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.59|      25|      31|     198|     222|       3
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  198-  222 (44.01/30.09)	STVSSPSSRSLA..SSVPSEWGDTYGS
  230-  256 (37.58/24.51)	SSLSSQRDQALAnmNKLYNRTGSPSGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     211.87|      63|     120|     612|     674|       4
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  612-  674 (108.43/89.50)	TAPVGTF.CYIDPEYQRTGVVSMKSDVYALGIVILQL.LTAKSPMGIAHVVETALEEGHFL..DILD
  733-  799 (103.44/84.98)	TPPPSHFiCPILQEVMVDPYVASDGYTYDRKAIELWLsMNDKSPMTNLRLPHKNLIPNHSLrsAIMD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.77|      20|      31|     310|     329|       5
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  310-  329 (34.28/22.22)	DIATNLKHSHDQEYLKLEID
  343-  362 (33.50/21.55)	EIAQNESFDASQKLHKLGIQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.64|      28|      33|     365|     393|       6
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  365-  393 (38.95/30.00)	EDEIKlKESELTEEKVRRLIRKKEREQQE
  398-  425 (45.69/30.68)	EDQFK.SDSAEREAKQNNDIQEGDENKTE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.64|      29|     283|     156|     184|       7
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  156-  184 (50.53/37.41)	TASRICECIPSFCTAYVVSKGKLSSVHSA
  440-  468 (48.11/35.25)	TWEEIQASTSSFSVDLMIGKGSYGTVYKA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29767 with Med32 domain of Kingdom Viridiplantae
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