<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29766
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MWTNIFKLGELQNVSWFQFLPIEPDLSTASERSSKAEQKDALNNIVLSAHLHLQSEGFLSTWTNSFVGPWDPSQGEHNPDEKIKLWLFLPGRHSSVPEMAQHAVAKLRVVSNGLWVAPGNSEEVAAGLCQALRNSLERTLRGLSYARFGDVFTKYYPPTRNQNSFRRAQPTIEFVFAATEEAIFVHVVISARYMRNLCSDDIEKVLTHSPRSVGEGLPVIVAPSGMLGKLVGCCPSDLVRQVYSSKLSAATLPGFTQPTICQLRGQSYYVEIALGFPAATTDKVPESENNQIIKELDTVKDAQLSADEHQKLESADSVPVLERTFIYPPEAIMVPMVHQAFVRFSSKRMCSQGCMGNSSWEGWPFWNFSPSSYFLNSSCLGSSRGLGVNSNFLRLRRQKNNNYTSTASSISSVSSTSNGSEHAVAAEGGDLSADADSMACHQSDLPSNIAGSKMVSKRPRSEITEVSSRAGKESVDNNQGANGQGRCSWGWDEEGVVMDINLLISEFGDFSDFFQEEELDFGEPPGTAESHSLVIPGSDCGDATFTDSPSTAMDIPEQRLSPVGLSSLEVFNHQTMAPIHDVVSKVQEPQKDIASPTGSQSVVLSSGRSSYLTKAEALLTYAPEYAAVEISVGEAPTSLFTNPYQPKSIKPGSSSFNSRVYSYDAAQSSQMESGEDKAEKFVRLTSGNLSRDIGSSNLYTVVQVGKKESDKGLKNNEIQSGKEEASRPISGETSLNSSLVSQRKSDSMFNAGYFLLSMKTALATEIECIRFQAAMCRIRHTLLSLRSKASTELKSAFSSLMHTDVNSKLDLVPKYDIKRKENIPARLSIDVDHEVYDRSQIENVGVWRSVGTPKGATPLESFSAKTYTGPSQGLSAKRQPIVDLLSAMALIVQQSTSFVDVALDMDDGDGSFFWLSLDEQKRRGFSCDPSMVHAGCGGILGTCHSKDCAGVDLVDPLSAEVSESSVISLLQSDIKTALKTAFASMDGPLLVTDWCRGRSNAAESASIGDAYSFQHPTGDIRESSSSISIGGDSMSPPLSSHVMSNDRGTLELEHHRGYHRVRPTVAVLPLPSLLVGYQDDWLKTSANCLSLWEKAPLEPYASPKPVTYYALCPDIDMLTSAATDFFLQLGTIYEICKLGTHSPQNSGGQMELSPGKYLSSGLVLIECPDQVKIGNSHSSSISSTSEYLQALSKSWTVKSFVTSLTRVIKDIKLNSNILANQKESTSGPCTVIYVVCPFPEPSAVLETLVECSVALGSVMLSPERERKSFLYSQVTKALNCNASVDESSASNVVMLSGFSIPKIVLQIVPIGTLLRLQKPNNELAVLKDMAFTVYNKARRIPKAMTTSDMFQSPAYMGRSQSTMMHATSPGPTLWKECLVPRMSRETEFDASMRSSVTWDNSWPGRAGGFMDPNKIPDVCVQDDRKYAFEPLFILAEPGSVDYSTGMESSKSNVDTSGSGIYSSISGGGSDSGVEGSDNDNAASLHCCYGWTEDWRWLVCIWTDSKGELLDSLIFPFGGISSRQDTKVFQSLFIQILQQGCQIMSSAPECSNTRPRDVIITRIGGFLELEIQEWQKAIYSFGGNEVKKWPVQLRRSIPEGIPSNSNGPALQQQDMGLMQDRNMPSSPSPLYSPHAKSSFMKGGALGQSGNKKQILVEQAGMDSSKGSLHLVRSISLVAVSQDHSLHLTCQADLLARPTPGEGNQSSSGPSSYLEGFTPVKSIGSMSASYLLVPSPSMRYLSPATLQLPTCLTSESPPLAHLLHSKGTAIPLAMGYVVSKAVPPVRKDSARLAKEERPSVLSVSIIDHYGGSIAAVQEKMSRGSGKQTRSFTQESAGRDHEMEMHHVLETVAAELHSLSWMTVSPVYMERRSALPFHCDMVLRLRRLLHYADRHLSQSAEKGDVA |
Length | 1903 |
Position | Kinase |
Organism | Oryza brachyantha |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade>
Oryzoideae> Oryzeae> Oryzinae> Oryza.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.270 |
Instability index | 56.57 |
Isoelectric point | 5.76 |
Molecular weight | 207283.56 |
Publications | PubMed=23481403
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP29766
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 265.13| 85| 121| 1581| 1701| 1
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1592- 1682 (138.52/136.47) LRRSIP.EGIPSNSN......GPALQQQDMGLMQDRNMPSSPSPlysPHAKSSFMKGGALGQSGNkkqILVEQAGMDSSKGSLHLVR..SISLVAVS.QDH
1712- 1806 (126.60/61.82) LEGFTPvKSIGSMSAsyllvpSPSMRYLSPATLQLPTCLTSESP...PLAHLLHSKGTAIPLAMG...YVVSKAVPPVRKDSARLAKeeRPSVLSVSiIDH
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 365.99| 111| 120| 306| 423| 2
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306- 421 (186.40/116.30) ADEHQKLES.ADSVPVLERTFiypPEAI....MVPMVHQAFVRFSSKRMCSQGCMGN..SSWEGWPFWNFSPSSYFLNSSCLGSSrgLGVNSNFLRLRRQKNNNYTSTASSISSVSSTSNGSE
425- 542 (179.59/94.82) AAEGGDLSAdADSMACHQSDL...PSNIagskMVSKRPRSEITEVSSRAGKESVDNNqgANGQGRCSWGWDEEGVVMDINLLISE..FGDFSDFFQEEELDFGEPPGTAESHSLVIPGSDCGD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 76.18| 22| 127| 140| 161| 3
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140- 161 (42.20/28.22) LRGLSY.....ARFGDVFTKYYPPTRN
263- 289 (33.98/21.15) LRGQSYyveiaLGFPAATTDKVPESEN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 272.91| 79| 477| 853| 936| 4
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853- 936 (124.51/89.79) PKGATPLESFSAKTYTGPSQGLSAKRQPIVDLLSAMALIVQQSTsfvDVALDMdDGDGSFFWLSLDEQKRRGFsCDPSMVHAGC
1341- 1419 (148.40/90.28) PKAMTTSDMFQSPAYMGRSQSTMMHATSPGPTLWKECLVPRMSR...ETEFDA.SMRSSVTWDNSWPGRAGGF.MDPNKIPDVC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 78.09| 24| 24| 743| 766| 5
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743- 766 (39.37/24.75) RKSDSMFNAGYFLLSMKTALATEI
770- 793 (38.73/24.22) RFQAAMCRIRHTLLSLRSKASTEL
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