<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29764

Description Uncharacterized protein
SequenceMADRLDRWRELFRGAAGSAGICDVIENAILVAAADAPQELLRRRDRTCEILFTAPRAPPPCHHGCGSATTPTPATPVEEDKGSVRRVPEKQSKVDSSSNGALGGGRRDGQDEDSDSDSDDERLRRAAASNYGHNYDDDEEDEEEQQDAAAEEEEQEEDPETVELEALTNEIDEESQVVGEVLRIKDLFLHKEDHSDATLFESLRRLQLMQLSVSTLKATEIGRAVNGLRKHNSQQIRHLVRTLIEGWKVLVDEWVSTTNVALTDNSPGSSKTSVVDDVDDEGLPSPPLDEGAFFAPQTTAIQLSEFFDEMDEDGNLRHNNDGSLGNKRENNVRRPTSHPGLAKQEPPRNMGAVEKVQSRKPELPRQEPSSRQPNPQIPQNSSLQVRHQAMLNRQSRPLSSESGPGRPLRAAPQQKPIPEMKSRVAREQFAVERKPAASLVNKSRLPAQPSTGVKLESAKPKIYDSLESNGRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKHQNRQAMLKSRNHIRSWANGRR
Length529
PositionUnknown
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.984
Instability index70.95
Isoelectric point5.54
Molecular weight59052.65
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29764
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.12|      55|      77|     278|     354|       1
---------------------------------------------------------------------------
  278-  352 (76.78/63.19)	VDDEGlPSPPLDEGAFFAPQTTAIQLSeffdemdedgnlrhnndgSLGNKRENNVRRpTSHPGLAKQEPPRNMGA
  356-  410 (97.34/39.63)	VQSRK.PELPRQEPSSRQPNPQIPQNS..................SLQVRHQAMLNR.QSRPLSSESGPGRPLRA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.56|      46|      79|      78|     125|       2
---------------------------------------------------------------------------
   78-  125 (68.61/55.30)	EEDKGSVrRVPEKQSKVDSSSNgALGGGRR..D..GQDEDSDSDSDDERLRR
  156-  205 (65.95/43.19)	EEDPETV.ELEALTNEIDEESQ.VVGEVLRikDlfLHKEDHSDATLFESLRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.44|      18|      20|     413|     432|       3
---------------------------------------------------------------------------
  415-  432 (31.57/21.63)	KPIPEM..KSRV.AREQFAVE
  434-  454 (20.87/ 6.13)	KPAASLvnKSRLpAQPSTGVK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29764 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LFTAPRAPPPCHHGCGSATTPTPATPVEEDKGSVRRVPEKQSKVDSSSNGALGGGRRDGQDEDSDSDSDDERLRRAAASNYGHNYDDDEEDEEEQQDAAAEEEEQEEDPETVELEALTNEID
2) SEFFDEMDEDGNLRHNNDGSLGNKRENNVRRPTSHPGLAKQEPPRNMGAVEKVQSRKPELPRQEPSSRQPNPQIPQNSSLQVRHQAMLNRQSRPLSSESGPGRPLRAAPQQKPIPEMKSRVAREQFAVERKPAASLVNKSRLPAQPSTGVKLESAKPKIYDSLESNGRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKHQNRQAMLKSRNHIRSWANGRR
3) VALTDNSPGSSKTSVVDDVDDEGLPSPPLDEGAFFA
51
304
260
172
529
295










Molecular Recognition Features






MoRF SequenceStartStop




1) AKPKIY
2) MLKSRNHIRSWANGRR
458
514
463
529