<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29759

Description Uncharacterized protein
SequenceMQGRNNLTVGSTCYDKPRVNWQDHANAIQSSCIKDEFLSSSFLFSLPTQRPDQGVGCTGMLPLRSTACKIQGLERLQVSSIEKAWRSLCNTQVARTNYLRPGLSTKVKYCDSNHAHTYGTSSSYHVNIVDTLSRNRNPSQESMHQQTESGTMEKSGSHLPAGTNSCTRTYLNNHVVQADTITPTNQSLVRTGAKLFSTAPFADMCDDSKLDAMDEDELLASIDVDRIVMEHYQATNTPRGSSRAPLGKCNLNGSDENNLPQELSVMCNHGSKLAFCPEAKSHLHDLKDNLLLISNELIEGDLSPQRTNELHQKRALLKKQIELLGEYTVRLTQDEERQMSHSMASTTALQGHHPIVNQSSSCVKDTNRFQSPIYMRSEPTNSGLCFSSAPYSYMDGLSTPLPSVQRDYNRRIIDINYTEGSGDKRWSSTHFAWTKELEENNKRVFGNHSFRPNQREIINATMSGNDVFVLMPTGGGKSLTYQLPALICNGVTLVVSPLVSLIQDQIMHLLQASISAAYLSASKEWSEQQEILRELMSPTCAYKLLYVTPEKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQNLGILKQKFPQTPVLALTATATATVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKTKRCLEDINNFINANHFKECGIIYCLSRMDCEKVAAKLKEYGHKASHYHGSMDPEDRAHIQEQWSKDRINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQLSSCVLYYSYSDYIRLKHMVTQGVVEQVTSASRGGSSQEQALETHKENLLRMVSYCENDVDCRRLLQLIHFGEMFDPSHCAKTCDNCLKELRWIEKDVTNIARQLVDLVMMAKQAYSASHILEVYRGSVNQNVKKHRHDTLSLHGAGKHLAKGEAARIMRHLVTEGILIEDVKKSENMYGSVSSVLKANHKQVGHLLSGKHNIVLKFPTPDKASKMGVLDESSIPQINKTIQQQSHLDESLSSELFEALKCLRTQIMDENRCLAYHIFRNETLKEISCRIPRTKDELLEINGVSKNKLNKYGDRVLATIEEFLTKNPNSTKKSSSGGSNEHSEAVKKRRGFTATNASSNCDDFEERTVQSKKRAAKMRNSRQEVSDAASVVQDVRYIDLELDGYEQGDDLSYRYSAPKPVSSGRVLPTWQSAKIS
Length1190
PositionUnknown
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.525
Instability index48.40
Isoelectric point8.27
Molecular weight133825.96
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29759
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     540.15|     132|     142|     675|     816|       1
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  542-  672 (160.09/100.55)	YKLLYVTPEKIAksdALLRQLENLYSRGHLSRIVIDEAHCVSQW.GHD..............F.RPDYQnlGILKQKFPQTpvLALTATATATVKEDvvqvlG..LANCIIFRQSFNRPN.LRYFVwpkTKRC.LEDINNFINANHFKECG
  675-  806 (223.91/146.15)	YCLSRMDCEKVA...AKLKEYGHKASHYHGSMDPEDRAHIQEQW.SKDRINIICATVAFGMGINKPDVR..FVIHHSLPKS..IEGYHQECGRAGRD.....G.QLSSCVLYYSYSDYIR.LKHMV...TQGV.VEQVTSASRGGSSQEQA
  820-  937 (156.15/112.14)	YCENDVDCRRL....LQLIHFGEMFDPSHCA.KTCDNCLKELRWiEKDVTNIARQLVDLVMMAKQA.....YSASHILEVY..RGSVNQNVKKHRHD.....TlSLHGAGKHLAKGEAARiMRHLV...TEGIlIEDV.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     239.17|      76|     327|      22|     135|       2
---------------------------------------------------------------------------
   22-  106 (113.40/85.53)	QDHANAI..QSSCIKD..EFLSSSFLFSLPTqrpDQGVgCTGMLPLrstaCKIQGLeRLQVSSIEKAW.RSLCNTQVARTNYLRPGLSTK
  350-  430 (125.78/69.20)	QGHHPIVnqSSSCVKDtnRFQSPIYMRSEPT...NSGL.CFSSAPY....SYMDGL.STPLPSVQRDYnRRIIDINYTEGSGDKRWSSTH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     218.84|      70|     808|     144|     220|       3
---------------------------------------------------------------------------
  144-  220 (103.81/76.83)	HQQTesGTMeKSGSH.....LPAGTNSCTRTYLNNHVVqaDTITPTNQSLVRTGAKLFSTAPFADMCDDSKLdaMDEDELLA
  955- 1029 (115.03/64.82)	HKQV..GHL.LSGKHnivlkFPTPDKASKMGVLDESSI..PQINKTIQQQSHLDESLSSELFEALKCLRTQI..MDENRCLA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29759 with Med34 domain of Kingdom Viridiplantae
Unable to open file!