<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29757

Description Uncharacterized protein
SequenceMSHERTAPDNWTLHQRAVLRQQMLQGTTNMLDKLRRISLNIIDRGENLGAQGASPSQQQNVCTTTQDSSQVNQEQVGLMVVLNNNNILNINSTELSPVTTPGQFTQWPMQFPSQHQQQAKQLQPTNIAGCNPASLPMQLQGQNFQQNQVLEQNCSWAGTQQRQMAVTQQQQQQQEAQLMRLNQQCIDLMRMTNQQCIGENHQQQEQLMRMTNQQCIGENHQQQEQLMRMNQQCIELARMNQQYVVQNQQQSAELTMMNQQCMTGNQQQNCIQRNQILRTQQQGCAARIQIGHPELQKCQENVGMECHSLTPLHGQVVAAQQSVVCHSTQTSEQMISSGEEHWREEIFQKILSLKDSYLSELLEFDRMVKVPKISKERFSSLPASQAGKFKRAVQVKKAIRKMLGLLNTQKSDVHKGLEDEINKFINTMEQLRGCLVRKNVQNKATETGCQSQNCDQQPQISNLTGNASPFTCDESRHQRQEEQLTDAKTPKIGQAVMTQTPTVHQENHGYNLLGVPSPCLSPLSVQPLSTNPPEDCFIPSPVTSTGAVQAQAAASPSASVKSPVSKPGAAWCASMKSRLASPTSRPEAAHVASIQVDSPLPAAVPSELLQSPVGEPQIGEAGAPLAEHDVTEFLVHSTEAAAEHSGCNQAAPPTEQLEETAPIEAGHNAQDQVGHGDERMEADKPISRLIQAILSSSPQLLLDTANSMEWVIREASLVPLALSGTDVSSISIGFHDFSRSEHTAKRQKTQMNANDDSFKKKKANDALLHEIETTNRKLVDTVISIADEDEAEETIPENGGGTLIELSYSAVSLTPSLKSHLATSEMPIVTPVKLFVPMDYPRSSPMLVDNDGEDGNTRELSDFSLVVGVAFQRALAELPEPRTIEATARAWDGCVRRFVIEVARRHGGGTFSSVHGEWAVTSAQSG
Length926
PositionTail
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.573
Instability index52.37
Isoelectric point5.58
Molecular weight102188.59
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29757
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     102.67|      16|      16|     189|     204|       1
---------------------------------------------------------------------------
  143-  157 (21.86/ 6.49)	NF.QQ...NQVLEQNCSWA
  200-  218 (32.84/13.18)	NHQQQeqlMRMTNQQCIGE
  219-  235 (23.47/ 7.46)	NHQQQeqlMRM.NQQCIE.
  247-  264 (24.50/ 8.09)	NQQQS.aeLTMMNQQCMTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.37|      12|      33|     521|     532|       2
---------------------------------------------------------------------------
  521-  532 (21.28/14.14)	SPLSVQPLSTNP
  544-  555 (16.08/ 8.51)	STGAVQAQAAAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     133.48|      33|      36|     588|     620|       4
---------------------------------------------------------------------------
  588-  620 (56.67/29.89)	AAH.VASIQV...DSPLPAAVP.SELLQSPV.GEPQIGE
  626-  659 (46.31/23.16)	AEHdVTEFLV...HSTEAAAEH.SGCNQAAP.PTEQLEE
  665-  700 (30.49/12.88)	AGH.NAQDQVghgDERMEADKPiSRLIQAILsSSPQL..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     172.74|      55|     255|      15|      70|       5
---------------------------------------------------------------------------
   15-   70 (92.28/47.54)	QR.AVLRQQMlQGTTNMLD....KLRRISLNIIDRGENLGA.QG.ASPSQQQNVCTTTQDSSQ
  272-  333 (80.46/37.77)	QRnQILRTQQ.QGCAARIQighpELQKCQENVGMECHSLTPlHGqVVAAQQSVVCHSTQTSEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.33|      18|      20|     447|     464|       6
---------------------------------------------------------------------------
  447-  464 (33.88/21.62)	TG....C.QSQNCDQQPQISNLT
  470-  485 (21.95/10.81)	FT....CdESRHQRQEEQ...LT
  492-  512 (19.50/ 8.59)	IGqavmT.QTPTVHQENHGYNL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.43|      22|      52|     348|     369|      10
---------------------------------------------------------------------------
  348-  369 (35.74/24.42)	QKILSLKDSYL..SEL...LEFDRMVK
  371-  394 (28.14/17.73)	PKISKERFSSLpaSQA...GKFKRAVQ
  400-  423 (25.55/15.45)	RKMLGLLNTQK..SDVhkgLE.DEINK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29757 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ETGCQSQNCDQQPQISNLTGNASPFTCDESRHQRQEEQLTDAKTPKIGQAVMTQTPTVHQENHGYN
2) PLPAAVPSELLQSPVGEPQIGEAGAPLAEHDVTEFLVHSTEAAAEHSGCNQAAPPTEQLEETAPIEAGHNAQDQVGHGDERMEA
3) PVTTPGQFTQWPMQFPSQHQQQAKQLQPTNIAGCNPAS
4) TNPPEDCFIPSPVTSTGAVQAQAAASPSASVKSPVSKP
446
599
97
530
511
682
134
567










Molecular Recognition Features






MoRF SequenceStartStop




NANANA