<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29755

Description Uncharacterized protein
SequenceMDGAHGQRQQPLSPAISASAALPQQQRQMQLHHQHHHPARSAIADLFTLYLGMKSKQRVEDPTRETSNKLQKRVTALNRDLPPRDEQFISDFEQLHVQFTDQEQLQAVTESVLISFVLQCSSHAPQSEFLLFATRCLCARGHLRWDNLLPSLLNVVSSMEAPMGQGVSVTTGAGGPATSSSSAIAVPNAPSFHPSNPTSPLSTMNTIGSPTQSGIDQPIGANVSPIKGAEFSSPGQLGLAARGDQSRRGAEISYLHHLSCRIILAGLESDLKPGTNAVIFQHMVNWLVNWDQRPHGVDPADVLQTLRLERPLHEWMHLCLDVIWILVNEDKCRVPFYELVRSNLQFLENIPDDEALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFATHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEELANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRQHPQQSSTPGAVFSPDMIGEAVADRTIELLRLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKSLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFMSLDERAMGMFWVLSFTMAQPACEAVMNWFTSAGVADLIQGPNLQPNERMTMMRETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQNVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILNKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKVKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITMKTRGIAEVEHIIYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPTYVMTYLSHSFPQHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEDVTANIYTMVDVLLHHIQLELQRGHQIQDLLSKAITNLAFFIWTHELLPLDILLLALIDRDDDPYALRLVINLLERPELQQRIKAFCNSRSPEHWLKNQPPKRVELQKALGNHLSWKERYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAVYSTFLAFHPLRFTFVRDILAYFYGHLPTKLIVRILNVLGVSTKTPFSESFAQYLASSNSSICPPPEYFANLLLGLVNNVIPPLSCKSKSNPSDASGSTTRTTYNKPHTSSAGGISNSDGQRAFYQNQDPGSYTQLVLETAAIEILSLSVPASQIVSSLVQIIAHVQAMLIQSNSGHGMSGGLGQNSGVPISSGGGVEPVGARPNTTANGINTTNFVSRSGYSCQQLSVLMIQACGLLLAQLPPEFHTILYGEAARIIKDCWWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNIVALLHSFFSNLPHEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQAPHVEASEISDIIDFLHHAVMYEGQGGPVQSTSKPKLEILTLCGKVMEILRPDVQHLLSHLKTDPNSSVYAATHPKLVQNPS
Length1620
PositionTail
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy-0.088
Instability index45.93
Isoelectric point6.89
Molecular weight181915.38
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29755
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.66|      21|      22|     270|     290|       1
---------------------------------------------------------------------------
  270-  290 (40.98/23.81)	DLKP.GTN.AVIFQ..HMVNWLVNW
  291-  315 (25.69/12.33)	DQRPhGVDpADVLQtlRLERPLHEW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     214.17|      66|     182|    1227|    1407|       3
---------------------------------------------------------------------------
  147-  214 (107.42/25.22)	NLLPSLLNVVSSMEAPMGQGVSVTTGAGGpaTSSSSAIAVPNAPSFHP..SNPTSPLSTMNTIGSPTQSG
 1316- 1383 (106.75/178.28)	QIVSSLVQIIAHVQAMLIQSNSGHGMSGG..LGQNSGVPISSGGGVEPvgARPNTTANGINTTNFVSRSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     235.71|      73|     183|    1227|    1301|       4
---------------------------------------------------------------------------
 1227- 1301 (119.04/85.63)	PPEyFANLLLGLVNNVIPP.LSCKSKSNPSDASGSTTRTTYNKPHTSSAGGISNSDGQ.....RAFYQNQdPGSY...TQLVLE
 1405- 1486 (116.68/74.47)	PPE.FHTILYGEAARIIKDcWWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNivallHSFFSNL.PHEWlesTHTVIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.64|      13|      15|     390|     402|       5
---------------------------------------------------------------------------
  390-  402 (24.35/15.74)	RFLSQSYPSIAGE
  408-  420 (25.28/16.68)	RYSPITYPSVLGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.69|      25|     183|     852|     918|       6
---------------------------------------------------------------------------
  894-  918 (47.17/77.53)	QPLLEQ.IMATSQHTWSEKTLRYFPP
 1082- 1107 (44.51/ 9.14)	RPELQQrIKAFCNSRSPEHWLKNQPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.70|      46|     637|      37|     134|       8
---------------------------------------------------------------------------
   87-  133 (73.74/105.13)	QFISDFEQLHVQFTDQEQlQAVTESVLISFVLQCSSHA.PQSEFLLFA
  933-  979 (78.96/25.42)	QAIQAWQQAETTVINQCN.QLLSPSAEPTYVMTYLSHSfPQHRQYLCA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.70|      16|      22|     438|     453|       9
---------------------------------------------------------------------------
  438-  453 (32.25/19.88)	WERAL...RCLR.HALR.TTP
  458-  478 (21.45/10.57)	WRRVLlvaPCYRqHPQQsSTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.82|      10|      15|     667|     676|      11
---------------------------------------------------------------------------
  667-  676 (20.13/11.18)	MFWVLSFTMA
  684-  693 (19.68/10.77)	MNWFTSAGVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.92|      13|      16|    1034|    1046|      15
---------------------------------------------------------------------------
 1034- 1046 (20.92/12.43)	QDLLSKAITNLAF
 1051- 1063 (20.99/12.50)	HELLPLDILLLAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.78|      45|     392|     594|     639|      16
---------------------------------------------------------------------------
  594-  639 (72.07/60.90)	LDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDqLQKGKQI
  989- 1033 (74.71/57.69)	LEINSANLARVLREFSPEDVTANIYTMVDVLLHHIQLE.LQRGHQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.48|      15|      19|    1164|    1182|      17
---------------------------------------------------------------------------
 1164- 1182 (15.68/17.72)	YstFLAFHPLRFtFVRdIL
 1184- 1198 (28.80/12.78)	Y..FYGHLPTKL.IVR.IL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29755 with Med23 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ATSSSSAIAVPNAPSFHPSNPTSPLSTMNTIGSPTQSGIDQPI
2) MDGAHGQRQQPLSPAISASAALPQQQRQMQLHHQHHH
177
1
219
37










Molecular Recognition Features






MoRF SequenceStartStop




NANANA