<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29754

Description Uncharacterized protein
SequenceMRARAVGLYKAISRILEDFDAIARTNPNATPKWQDVLGQFSMVSMELFNIVEDIKKVSKVFVVYPRNVNAENAAILPVMLSSKLLPEMEAEETTKRENLLSGITNLPVPAQIEKLKARIDMIGSACETAEKVITECRKTYGLGARQGTNLGPTLDKAQAAKIQEQEGLLRAAVNYGEGLRVPGDQRQYSSLPSHLVEVLPFGDGVYPKNTSTFVPNVVNAQGNPMQQVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQSTIPQLQDLQGQSQQKLQVPTQQQMQYNQALSQQYQNRQMQAARMQPGMSQSQLNQGNQLRSHIGQFTGAANSAMFTAAQASSNSQMMANIPGTMQSQSLLPQMQTLNQYSLNAGHPQRSHPSQMLTDQMFGMGGTNTTGIMGMQQQQQQFNMQANAQNLQQGMTALQNQTQNPNFAQQRQQNQQ
Length498
PositionHead
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.637
Instability index51.54
Isoelectric point9.51
Molecular weight54748.25
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29754
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     160.47|      31|      31|     318|     348|       1
---------------------------------------------------------------------------
  318-  348 (53.09/16.57)	QLQDLQGQSQQKL....QVPTQQQMQYN.QALSQQY
  376-  410 (34.20/ 8.25)	HIGQFTGAANSAMftaaQASSNSQMMAN.IPGTMQS
  416-  442 (36.83/ 9.40)	QMQTL...NQYSL....NAGHPQRSHPS.QMLTDQ.
  443-  473 (36.35/ 9.19)	.MFGMGGTNTTGI....MGMQQQQQQFNmQANAQNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     201.32|      51|      61|     190|     245|       2
---------------------------------------------------------------------------
  141-  176 (43.99/14.60)	..............GLGARQGTNLGPTLDKAQAAK.............IQEQEG..LL.RAAVNYG...
  190-  245 (86.65/44.90)	SLPShlvevLPFGDGVYPKNTSTFVPNVVNAQGNP.............MQQVSGGQLLGRPAPSPGATG
  253-  309 (70.68/29.26)	STPP.....MPYAN..SPRSGT....NMMNTP.SPqqhltaqqhrqklMQTSQQQQLHTQQQLRPSAAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29754 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TSTFVPNVVNAQGNPMQQVSGGQLLGRPAPSPGATGTPNFENVSTPPMPYANSPRSGTNMMNTPSPQQHLTAQQHRQKLMQTSQQQQLHTQQQLRPSAAGMLAQSTIPQLQDLQGQSQQKLQVPTQQQMQYNQALSQQYQNRQMQAARMQPGMSQSQLNQGNQLRSHIGQFTGAANSAMFTAAQASSNSQMMANIPGTMQSQSLLPQMQTLNQYSLNAGHPQRSHPSQMLTDQMFGMGGTNTTGIMGMQQQQQQFNMQANAQNLQQGMTALQNQTQNPNFAQQRQQNQQ
210
498










Molecular Recognition Features






MoRF SequenceStartStop




NANANA