<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29753

Description Uncharacterized protein
SequenceMAGNKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSVQADMKMWPFKVVPGPGDKPMIVVTHKGEEKKFSAEEISSMVLTKMKEIAEAFLSTTIKNAVITVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKASSTGEKNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYATITRARFEELNMDLFRRCMEPVEKCLRDAKMDKAQIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNQKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTKDNNLLGKFELTGIPPAPRGVPQINVTFDIDANGILNVSAEDKTTGKKNKITITNDKGRLSKEEIERMVQEAEKYKSEDEQVRHKVEARNALENYAYNMRNTVRDDKIASKLPGDEKKKIEDAIEDAIKWLDGNQLAEADEFEDKMKELENICNPIISKMYQGGAGGPTGMDEDVPNGGAGTGGGSGAGPKIEEVD
Length653
PositionUnknown
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.453
Instability index35.99
Isoelectric point5.34
Molecular weight71608.31
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29753
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.63|      52|     188|     171|     226|       1
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  171-  226 (75.06/56.67)	GLNVMRIINePTaAAIAYGLDKKAS.STGEKNVLIFDLggGTFDVSILT..IEE..GIFEV
  363-  419 (74.57/42.46)	GKELCKSIN.PD.EAVAYGAAVQAAiLSGEGNQKVQDL..LLLDVTPLSlgLETagGVMTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.27|      18|      21|      39|      56|       2
---------------------------------------------------------------------------
   17-   34 (19.08/11.75)	....TTYSCVGVWQHDRveIIA
   39-   56 (32.67/25.75)	NR..TTPSYVAFTDTER..LIG
   61-   79 (24.52/17.36)	NQvaMNPTNTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.53|      18|      19|     568|     586|       3
---------------------------------------------------------------------------
  567-  585 (23.93/22.97)	SKLPGDEKKKiEDAIEDAI
  586-  603 (31.60/25.00)	KWLDGNQLAE.ADEFEDKM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.31|      18|      19|     113|     130|       4
---------------------------------------------------------------------------
  113-  130 (28.17/17.49)	KGEEKKFSAEEISSMVLT
  133-  150 (27.15/16.63)	KEIAEAFLSTTIKNAVIT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.30|      37|      74|     425|     467|       5
---------------------------------------------------------------------------
  425-  462 (59.50/58.02)	TTIPTKKE...QVFSTYSDNQPGVLiQVYEGERTRTKDNNL
  469-  508 (57.80/37.57)	TGIPPAPRgvpQINVTFDIDANGIL.NVSAEDKTTGKKNKI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29753 with Med37 domain of Kingdom Viridiplantae
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