<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29751

Description Uncharacterized protein
SequenceMEAVEEEEEHEEEEEEAVYCAVGKEAGKEWRANLLWVLANFRRSRRLVFVHVHRPPSRVNMMGAWVPVSQLAEEEVNAYRQLEEEKISKVLDDLLDICKSQKVNASKIIFSCDDTAGGLLQLVDDHGITELVMGAASDKSYSRRMRAPRSKKAQKLQLKASPSCKIWFVCKGNLICTREVNEGLNRTGSSTTSTSPRSSTSDYSRSKSSPRAHSISSEPPFSIQDSAEPTTSSVDQTPIREDNAMDRSTEGFNHHEAVAVASSSAVPVSENVETVQRSAGAASVQSLQEIEEDSPTPSGHGSEDAGDLGDAAYDKLKDAVIEAENLRHEAYEETRRRQKAERDLAAATRIANDAESSHQREARHRKEVEERLARERAAMEQERRELDDILEQTRKVDARAAELELQIAGSERMMSDLKSKLSESYGLLHQLRRDNPAAAAAEATDGGQRTTFLRLGLSELEEATNHFDESVMIGGDGSRGTVYRGDLRNMTVAVKVISRDVAVDELGFCSEVEAISRARHPNLVTLVGACPEARAVVYEFVPGGSLEDRLALAGEGAAPPLSWHALCGVAHRTCSALAFLHSTQPRATVHGDVRPANILLDEECGSSKLAGVGMRRLVRDSGGVALARAAVGYVHPRHLATGEMTPERDVYALGVVLLRLVTGKPPFMAKKEARDAARRNKGWDEVVGASAGGWPVEVGREVALLGLKCCDVEEEEEDPAGARRLPRGLLDEACGVLEAAMSAAPGRSWSSLSSTSDGEGGGGGGAPSYFLCPILKEVMRDPQIAGDGFSYEAEAIREWLGGGRDPHPQVMRDPQIAGDGFSYEAEAIREWLRSGHDTSPMTNLRLPRGELVPNRPLRDAIHEWRLRRAMRSKFAATR
Length878
PositionTail
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.514
Instability index55.62
Isoelectric point5.45
Molecular weight95973.27
Publications
PubMed=23481403

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29751
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     167.62|      30|      30|     779|     808|       1
---------------------------------------------------------------------------
  499-  521 (36.41/19.48)	.RDVAVDELGFCSEVEAI......SRARHP
  779-  808 (66.76/42.15)	MRDPQIAGDGFSYEAEAIREWLGGGRDPHP
  811-  840 (64.44/40.41)	MRDPQIAGDGFSYEAEAIREWLRSGHDTSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.90|      13|      59|     137|     151|       2
---------------------------------------------------------------------------
  137-  151 (20.95/18.77)	SDksYSRRMRAPRSK
  201-  213 (24.95/15.04)	SD..YSRSKSSPRAH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     183.65|      47|      58|     290|     336|       3
---------------------------------------------------------------------------
  224-  276 (51.73/24.58)	..QDSAEPTTSSVDQTPIREDNAMDRstegfnH..HEAVAVASSSA.VPVSEnvETVQ
  290-  336 (76.36/39.61)	IEEDSPTPSGHGSEDAGDLGDAAYDK......L..KDAVIEAENLR.HEAYE..ETRR
  350-  395 (55.56/26.92)	IANDAE..SSHQRE.ARHRKEVE.ER......LarERAAMEQERRElDDILE..QTRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     133.85|      32|      35|     545|     578|       4
---------------------------------------------------------------------------
  545-  576 (54.85/23.97)	SLEDRLALAGEGAAPPLSWHALCGVAHRTCSA
  582-  608 (45.78/20.00)	STQPRATVHGDVRPANILLDEECG.....SSK
  720-  743 (33.22/13.00)	........AGARRLPRGLLDEACGVLEAAMSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.01|      23|      28|     619|     643|       5
---------------------------------------------------------------------------
  619-  643 (36.36/33.79)	RD..SGGVALARAAVGyvHPRHLATGE
  648-  672 (35.64/24.85)	RDvyALGVVLLRLVTG..KPPFMAKKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.25|      17|      29|     447|     463|       7
---------------------------------------------------------------------------
  447-  463 (28.17/20.95)	GQRTTFLRLGLSELEEA
  477-  493 (30.08/22.96)	GSRGTVYRGDLRNMTVA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29751 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NEGLNRTGSSTTSTSPRSSTSDYSRSKSSPRAHSISSEPPFSIQDSAEPTTSSVDQTPIREDNAMDRSTEGFNHHEAVAVASSSAVPVSENVETVQRSAGAASVQSLQEIEEDSPTPSGHGSEDAGDLGDAAYDKLKDAVIEAENLRHEAYEETRRRQKAERDLAAATRIANDAESSHQREARHRKEVEERLARERAAMEQERRELDDILEQT
181
393










Molecular Recognition Features






MoRF SequenceStartStop




1) KFAATR
873
878