<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29750

Description Uncharacterized protein
SequenceMRPPRGRGFGRGGRGDGGGGRGGGGRGFGRGGDSGGRGGRGRGGRTPRGGRGGGGGGGGGRGGMKGGSKVVVVPHKHDGIFIAKAKEDALCTKNMVPGESVYGEKRISVQNEDGTKVEYRVWNPFRSKLAAAVLGGVDNIWIAPGTRVLYLGGASGTTVSHVSDIVGPTGLVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPARYRMLVGMVDVIFSDVAQPDQARILALNASYFLKNGGHFVISIKANCIDSTMPAEAVFASEVEKLKADQFKPSEQVTLEPFERDHACVVGGYRMPKKQKGTS
Length308
PositionUnknown
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.407
Instability index32.86
Isoelectric point10.12
Molecular weight32388.48
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:UniProtKB-KW

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29750
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     118.19|      18|      18|       8|      25|       1
---------------------------------------------------------------------------
    8-   25 (43.04/12.32)	GFGRGGRGDGGGGRGG..GG
   27-   44 (41.13/11.48)	GFGRGGDSGGRGGRGR..GG
   50-   67 (34.01/ 8.32)	G..RGGGGGGGGGRGGmkGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.38|      38|      57|     163|     206|       2
---------------------------------------------------------------------------
  163-  206 (56.52/54.20)	SDIVGP.TGLVYAVEFSH..RSGRDLVNMAKkrTNVIpiieDARHPA
  220-  260 (57.86/38.50)	SDVAQPdQARILALNASYflKNGGHFVISIK..ANCI....DSTMPA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29750 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MRPPRGRGFGRGGRGDGGGGRGGGGRGFGRGGDSGGRGGRGRGGRTPRGGRGGGGGGGGGRGGMKGGSKV
1
70










Molecular Recognition Features






MoRF SequenceStartStop




1) GYRMPKK
2) MRPPRGRGFGRGGRGDGGGGRGGGGRGFGRGGDSGGRGGRGRGGRTPRGGRGGGG
297
1
303
55