<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29749

Description Uncharacterized protein
SequenceMDGDGGVHDGIWSARCSVSSSSGSLLDAADDWDEQSLAADEDKVFVAVEADVEHGRSTFLWALQNLAARGSKIVVAHVHSSAQEISKIHCTSMKPEEISEYLKLAREEAEKNLDEYALIAKSTGKDMEIACEKVIIVMDDIAKGLEELITLHGITRLVMGAAADQYYSEEMKEPNSKIALKLMETASPSCKIWFTCNAHLICTREPNENLLAIYVPPAQTNTKPLSVCSISSQMSSIELENEAPSSEEYTLRSLVQSTMSEWDYIFGDWGRIGYGSFRTDDPISISEATTLAVIVDGTNKQSSVMHSPQESDSVNFLLPVCDPEQEEEEQNLYDDMRGKLKEACTRAELLKEEVHSESSKRRKAEMDLLIALQRVKESEKLYLQEGNQRKETEKTLARQRLEIDEIKRRHNALYDELQDTKKQKLVLEQHISEIKSAATDYVQKITEYFIQESCEEAKKRQKIKMDLLAVLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDELYHELKDVKEQKFSLEQVDASEETRRRRKAESDMLSALQRVHGLEHQYLHELKKREALDETLARQREEIQETKRELNKINGIHMTEIKSIRKVHEEKLAESKRFIQEIQAKYDKLLHERDTAIAESEKLRQMNRNGASITATTQIPDFSFFELRQATQDFDTALKIGTGRFMSVYKGFLRNTAVTVTLLHHQGLQGQSEFHQEVAVLSRLRHPNLMTLIGACPEAFGMVYEFLPNGSLEDQLSCEKNTPPLTWKARTRIIGEICSALTFIHSHKPHPVVHGNLNPMNILLDANFVSKLHICQILRKYNTGNNTYGTSSYIDPEFLSTGELAPRCDVYSFGIIILRLLTGQPPENITTMVEDAMEKSQLHSIMDTSAGSWPFVQANQLAHLGLRCANLSGRHRPDLTGEVWGVIKPLLKAAYQNHGCKHTFEALSDETHMPSYFICPILQEVMTDPHIAADGYTYEADAIREWLDGGNARSPMTNLRLEHRELTPNRVLRSAILEWRHQQQQHKR
Length1025
PositionTail
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.567
Instability index50.81
Isoelectric point5.67
Molecular weight116965.21
Publications
PubMed=23481403

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29749
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     149.09|      25|      25|     391|     415|       1
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  365-  382 (18.99/ 8.02)	..................................................EMDLLIALQR.........VKESEK.LY
  390-  414 (42.60/27.62)	K.................................................ETEKTLARQRL....EIDEIKRRHNALY
  415-  439 (21.48/10.08)	D.................................................ELQDT.KKQKLvleqHISEIK...SAAT
  440-  513 (17.65/ 6.90)	DyvqkiteyfiqesceeakkrqkikmdllavlqrvkdvenlnrnekmqrkDMEEKIARQRM....EIEETKRQRDELY
  570-  591 (29.38/16.64)	....................................................DETLARQRE....EIQETKRELNKIN
  592-  626 (18.99/ 8.01)	G......................................ihmteiksirkVHEEKLAESKR....FIQEIQAKYDKL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     453.42|     146|     179|     640|     792|       2
---------------------------------------------------------------------------
  640-  792 (228.13/171.84)	LRQMNRNGASITATTQI.PDF.SFFEL..RQATQDFD.TALKIGTGRFMSVYKGFLRNtAVTVTLLH..HQGLQGQSEFHQ..EVAVLSrLRHPNL..MTLIGACPEAFGMVYEFLpNGSLEDQlSCEKNTPPLTwkARTRIIGE.ICSALTFIHShKPHPVVHG
  815-  972 (225.29/141.88)	LRKYNTGNNTYGTSSYIdPEFlSTGELapRCDVYSFGiIILRLLTGQPPENITTMVED.AMEKSQLHsiMDTSAGSWPFVQanQLAHLG.LRCANLsgRHRPDLTGEVWGVIKPLL.KAAYQNH.GCKHTFEALS..DETHMPSYfICPILQEVMT.DPHIAADG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.33|      16|      28|      32|      47|       3
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   32-   47 (29.13/17.72)	WDEQSLAADEDKVFVA
   61-   76 (28.20/16.95)	WALQNLAARGSKIVVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.34|      14|     211|      16|      29|       4
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   16-   29 (24.98/17.02)	CSVSS..SSGSLLDAA
  228-  243 (20.37/12.49)	CSISSqmSSIELENEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.02|      27|      77|     452|     478|       5
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  452-  478 (44.86/24.68)	ESCEEAKKRQKIKMDLLAVLQRVKDVE
  530-  556 (44.16/24.20)	DASEETRRRRKAESDMLSALQRVHGLE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29749 with Med32 domain of Kingdom Viridiplantae
Unable to open file!