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Description
Uncharacterized protein Sequence MDGDGGVHDGIWSARCSVSSSSGSLLDAADDWDEQSLAADEDKVFVAVEADVEHGRSTFLWALQNLAARGSKIVVAHVHSSAQEISKIHCTSMKPEEISEYLKLAREEAEKNLDEYALIAKSTGKDMEIACEKVIIVMDDIAKGLEELITLHGITRLVMGAAADQYYSEEMKEPNSKIALKLMETASPSCKIWFTCNAHLICTREPNENLLAIYVPPAQTNTKPLSVCSISSQMSSIELENEAPSSEEYTLRSLVQSTMSEWDYIFGDWGRIGYGSFRTDDPISISEATTLAVIVDGTNKQSSVMHSPQESDSVNFLLPVCDPEQEEEEQNLYDDMRGKLKEACTRAELLKEEVHSESSKRRKAEMDLLIALQRVKESEKLYLQEGNQRKETEKTLARQRLEIDEIKRRHNALYDELQDTKKQKLVLEQHISEIKSAATDYVQKITEYFIQESCEEAKKRQKIKMDLLAVLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDELYHELKDVKEQKFSLEQVDASEETRRRRKAESDMLSALQRVHGLEHQYLHELKKREALDETLARQREEIQETKRELNKINGIHMTEIKSIRKVHEEKLAESKRFIQEIQAKYDKLLHERDTAIAESEKLRQMNRNGASITATTQIPDFSFFELRQATQDFDTALKIGTGRFMSVYKGFLRNTAVTVTLLHHQGLQGQSEFHQEVAVLSRLRHPNLMTLIGACPEAFGMVYEFLPNGSLEDQLSCEKNTPPLTWKARTRIIGEICSALTFIHSHKPHPVVHGNLNPMNILLDANFVSKLHICQILRKYNTGNNTYGTSSYIDPEFLSTGELAPRCDVYSFGIIILRLLTGQPPENITTMVEDAMEKSQLHSIMDTSAGSWPFVQANQLAHLGLRCANLSGRHRPDLTGEVWGVIKPLLKAAYQNHGCKHTFEALSDETHMPSYFICPILQEVMTDPHIAADGYTYEADAIREWLDGGNARSPMTNLRLEHRELTPNRVLRSAILEWRHQQQQHKR Length 1025 Position Tail Organism Oryza brachyantha Kingdom Viridiplantae Lineage Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade>
Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity 0.06 Grand average of hydropathy -0.567 Instability index 50.81 Isoelectric point 5.67 Molecular weight 116965.21 Publications PubMed=23481403
Function
Annotated function
Functions as an E3 ubiquitin ligase.
GO - Cellular Component GO - Biological Function ATP binding GO:0005524 IEA:InterPro
protein kinase activity GO:0004672 IEA:InterPro
ubiquitin-protein transferase activity GO:0004842 IEA:InterPro
GO - Biological Process
Interaction
Repeat regions
Repeats
>MDP29749
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
6| 149.09| 25| 25| 391| 415| 1
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365- 382 (18.99/ 8.02) ..................................................EMDLLIALQR.........VKESEK.LY
390- 414 (42.60/27.62) K.................................................ETEKTLARQRL....EIDEIKRRHNALY
415- 439 (21.48/10.08) D.................................................ELQDT.KKQKLvleqHISEIK...SAAT
440- 513 (17.65/ 6.90) DyvqkiteyfiqesceeakkrqkikmdllavlqrvkdvenlnrnekmqrkDMEEKIARQRM....EIEETKRQRDELY
570- 591 (29.38/16.64) ....................................................DETLARQRE....EIQETKRELNKIN
592- 626 (18.99/ 8.01) G......................................ihmteiksirkVHEEKLAESKR....FIQEIQAKYDKL.
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 453.42| 146| 179| 640| 792| 2
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640- 792 (228.13/171.84) LRQMNRNGASITATTQI.PDF.SFFEL..RQATQDFD.TALKIGTGRFMSVYKGFLRNtAVTVTLLH..HQGLQGQSEFHQ..EVAVLSrLRHPNL..MTLIGACPEAFGMVYEFLpNGSLEDQlSCEKNTPPLTwkARTRIIGE.ICSALTFIHShKPHPVVHG
815- 972 (225.29/141.88) LRKYNTGNNTYGTSSYIdPEFlSTGELapRCDVYSFGiIILRLLTGQPPENITTMVED.AMEKSQLHsiMDTSAGSWPFVQanQLAHLG.LRCANLsgRHRPDLTGEVWGVIKPLL.KAAYQNH.GCKHTFEALS..DETHMPSYfICPILQEVMT.DPHIAADG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 57.33| 16| 28| 32| 47| 3
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32- 47 (29.13/17.72) WDEQSLAADEDKVFVA
61- 76 (28.20/16.95) WALQNLAARGSKIVVA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 45.34| 14| 211| 16| 29| 4
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16- 29 (24.98/17.02) CSVSS..SSGSLLDAA
228- 243 (20.37/12.49) CSISSqmSSIELENEA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 89.02| 27| 77| 452| 478| 5
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452- 478 (44.86/24.68) ESCEEAKKRQKIKMDLLAVLQRVKDVE
530- 556 (44.16/24.20) DASEETRRRRKAESDMLSALQRVHGLE
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Explaination for Stockholm format The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column. It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column. This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.#=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.
Alignment of MDP29749 with Med32 domain of Kingdom Viridiplantae
Intrinsically Disordered Regions
IDR Sequence Start Stop
NA NA NA
