<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29748

Description Uncharacterized protein
SequenceMDGAVQAAHRRCDTLGSGSQYSFRTSVSSVAEIPSEVEEVSPPPPPPAEEDKVFVAVAADVKHGKSTLQWALQNLAKDGAKVVIAHVHSPAQMIPMMGAKVHYTKMNPKQVSDYRNNEREKAEEKLDEYLLICRKLKVSCEKLIIEEEDIAKGLEDLIALNGITKLVMAAAADKHYSRKMNTPKSKTALKILEVADPSCKIWFTCKGHLICTREANTTVPAIPPSPAHTIASTLSSSSITSRMRSMTMNPSESEASSSSGSPRHDLNRSRTEVARYPSQGCGTTPSQLFEHSNQNINDGPTRTAIGSIDSWDEFGRPQNSWYNSSRNSDAVRVPGSAMQQPMYEPEDDHFASPRELENSGDDADIYSRLQEALREAQGLKKETYEESTRRRNAERNLISALQKVKELESLYQKEIMHRKITEEALEKQTQETEEKKEALEKQIQETEETKRQYNAIHDKLHDVQEHKLMVEHRMTEMQAVLKEHEERLAESKHLLLVLQADKERLQQERDAAVSEAQDLRWKNKQRIPMPGEDLSTEFSAYELEQATRGFDKELKIGEGGFGSVYKGTLRNTTVAIKMLHPMSMQGQSEFDQEVAVLSRVRHPNLVTLIGACREAFGLVYEFLPNGSLEDCLACLNNTPPLTWQVRTKIIYEMCSALTFLHSNKPHPVVHGDLKPANILLDANFVSKLGDFGICRLLIKSNTTAAAAAATTTMYRTTTPKGTFAYMDPEFLTTGELTPRSDVYSLGIIILRLLTGKPPQKIAEVVEDAIESGELHSILDPSAGSWPFVQANQLAHLGLRCAEMSRRRRPDLTGDVWKVIEPLMKAASLTAGRPSFVARPGDAPPDAPPPSYFVCPIFQEEMNDPHIAADGFTYEAEAIRGWLDSGHDRSPMTNLRLDHRELIPNRALRSAILEWQQQQQRQRHPQQQED
Length929
PositionTail
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.584
Instability index54.06
Isoelectric point5.91
Molecular weight104068.50
Publications
PubMed=23481403

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29748
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.21|      37|      53|     528|     566|       1
---------------------------------------------------------------------------
  528-  566 (58.47/39.99)	PMPGEDLStEFSaYELEQATRGFDKEL..KIG..EGGFGSVYK
  581-  621 (56.74/31.00)	PMSMQGQS.EFD.QEVAVLSRVRHPNLvtLIGacREAFGLVYE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     173.39|      50|      53|     375|     427|       2
---------------------------------------------------------------------------
  315-  358 (72.77/51.81)	...GRPQ...NSWYNSSRNSDAVRVPGSAMQQ.....PMYEPEDDHFASPRE.LEN
  375-  427 (72.88/63.35)	EAQGLKK...ETYEESTRRRNAERNLISALQKVKEleSLYQKEIMHRKITEEaLEK
  435-  465 (27.75/13.59)	KKEALEKqiqET.EETKRQYNA...IHDKLHDVQE.....................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29748 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RKITEEALEKQTQETEEKKEALEKQIQETEETKRQYNAIHDKLHDVQEHKLM
2) RPQNSWYNSSRNSDAVRVPGSAMQQPMYEPEDDHFASPRELENSGDDADIYSRLQEA
3) SITSRMRSMTMNPSESEASSSSGSPRHDLNRSRTEVARYPSQGCGTTPSQLFEHSNQNINDGPTRTAIGSIDS
418
316
238
469
372
310










Molecular Recognition Features






MoRF SequenceStartStop




NANANA