<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29740

Description Uncharacterized protein
SequenceMDRLRGCAFLLGVLLAGSLFAFSVAKEETKKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFADKEVQRDMKLVPYQIVNKDGKPYIQVKIRDGENKVFSPEEISAMILGKMKDTAEAYLGKKINDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKYSKDISKDNRALGKLRREAERAKRALSNQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKSQIHEIVLVGGSTRIPKVQQLLRDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSMTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTIGDKDKLADKLESEEKEKVEEALKEALEWLDDNQTAEKEEYEEKLKEVEAVCNPIISAVYQRSGGAPGGGADGEGGVDDEHDEL
Length665
PositionUnknown
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.469
Instability index26.80
Isoelectric point5.08
Molecular weight73385.21
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum lumen	GO:0005788	IEA:EnsemblPlants
plant-type vacuole membrane	GO:0009705	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process
protein folding in endoplasmic reticulum	GO:0034975	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29740
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.72|      20|      21|     586|     606|       1
---------------------------------------------------------------------------
  586-  606 (27.85/23.35)	DKLADKlESEEKEKVEEALKE
  609-  628 (35.88/25.30)	EWLDDN.QTAEKEEYEEKLKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.89|      15|      15|     183|     197|       2
---------------------------------------------------------------------------
  183-  197 (24.71/15.88)	AQRQATKDAGVIA.GL
  200-  215 (20.18/11.68)	ARIINEPTAAAIAyGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.64|      19|      22|      61|      81|       3
---------------------------------------------------------------------------
   61-   81 (27.11/24.97)	DQGNrITPSWVAFtDSERLIG
   86-  104 (33.54/20.25)	NQAA.VNPERTIF.DVKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     279.70|      82|     259|     227|     308|       4
---------------------------------------------------------------------------
  227-  308 (136.56/78.34)	FDLGG......GTFDVSI.LTID.NG..VFEVLATN.GDTHLGGEDFDQRIMEYFI...KLIKKKYS.....................K.DISKDNRALGKLRREAERAKRALSNQHQ
  401-  486 (47.53/22.70)	....G......AAVQGSI.LSGE.GGdeTKDILLLDvAPLTLGIETVGG.VMTKLIprnTVIPTKKSqvfttyqdqqttvsiqvfegeR.SMTKDCRLLG..................
  488-  570 (95.62/52.75)	FDLSGippaprGTPQIEVtFEVDaNG..ILNVKAED.KGT...GK..SEKIT...I...TNEKGRLS.....................QeEIDRMVREAEEFAEEDKKVKERIDARNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.43|      13|      31|     126|     138|       5
---------------------------------------------------------------------------
  126-  138 (24.14/15.49)	KD.GKPYIQVKIRD
  158-  171 (18.29/10.04)	KDtAEAYLGKKIND
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29740 with Med37 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KDKLADKLESEEKEKVEEALKEALEWLDDNQTAEKEEYEEK
585
625










Molecular Recognition Features






MoRF SequenceStartStop




1) KLKEVEAV
625
632