<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29740

Description Uncharacterized protein
SequenceMDRLRGCAFLLGVLLAGSLFAFSVAKEETKKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFADKEVQRDMKLVPYQIVNKDGKPYIQVKIRDGENKVFSPEEISAMILGKMKDTAEAYLGKKINDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKYSKDISKDNRALGKLRREAERAKRALSNQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKSQIHEIVLVGGSTRIPKVQQLLRDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSMTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTIGDKDKLADKLESEEKEKVEEALKEALEWLDDNQTAEKEEYEEKLKEVEAVCNPIISAVYQRSGGAPGGGADGEGGVDDEHDEL
Length665
PositionUnknown
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.469
Instability index26.80
Isoelectric point5.08
Molecular weight73385.21
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum lumen	GO:0005788	IEA:EnsemblPlants
plant-type vacuole membrane	GO:0009705	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process
protein folding in endoplasmic reticulum	GO:0034975	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29740
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.72|      20|      21|     586|     606|       1
---------------------------------------------------------------------------
  586-  606 (27.85/23.35)	DKLADKlESEEKEKVEEALKE
  609-  628 (35.88/25.30)	EWLDDN.QTAEKEEYEEKLKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.89|      15|      15|     183|     197|       2
---------------------------------------------------------------------------
  183-  197 (24.71/15.88)	AQRQATKDAGVIA.GL
  200-  215 (20.18/11.68)	ARIINEPTAAAIAyGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.64|      19|      22|      61|      81|       3
---------------------------------------------------------------------------
   61-   81 (27.11/24.97)	DQGNrITPSWVAFtDSERLIG
   86-  104 (33.54/20.25)	NQAA.VNPERTIF.DVKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     279.70|      82|     259|     227|     308|       4
---------------------------------------------------------------------------
  227-  308 (136.56/78.34)	FDLGG......GTFDVSI.LTID.NG..VFEVLATN.GDTHLGGEDFDQRIMEYFI...KLIKKKYS.....................K.DISKDNRALGKLRREAERAKRALSNQHQ
  401-  486 (47.53/22.70)	....G......AAVQGSI.LSGE.GGdeTKDILLLDvAPLTLGIETVGG.VMTKLIprnTVIPTKKSqvfttyqdqqttvsiqvfegeR.SMTKDCRLLG..................
  488-  570 (95.62/52.75)	FDLSGippaprGTPQIEVtFEVDaNG..ILNVKAED.KGT...GK..SEKIT...I...TNEKGRLS.....................QeEIDRMVREAEEFAEEDKKVKERIDARNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.43|      13|      31|     126|     138|       5
---------------------------------------------------------------------------
  126-  138 (24.14/15.49)	KD.GKPYIQVKIRD
  158-  171 (18.29/10.04)	KDtAEAYLGKKIND
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29740 with Med37 domain of Kingdom Viridiplantae
Unable to open file!