<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29738

Description Uncharacterized protein
SequenceMASNMQPSGPPQQQRPPMMGSSAPSQNLGPPMPLQFRPVIPLQQPPQFMQPGQQFRPVGQAMPGANIGMPGQMPHFQQPAQHLPHSGQVPPTSQAVPMAYQPARPMSSGPLQPPATFPGGHMPTMGGPMPPPSYTYQPSSVPPTIVQPWGPAPGQNVPPVAPLVQPGHQPVSSSTTLPSINSSEPSSSDWQEHTSNDGKKYYYNKKTRQSSWEKPAELMTPLERADASTEWKEFTTQEGRKYYYNKVTKQSKWTIPDELKMARELAEKASNSRHDHETETTAVASSTLDAAVNSVPPGAGSSHNMENTSSSSNTAMQNGGPSTVITPVISTGIPSVASDAGISRANNEYSSKASTADMQNGASADDLEEAKKTMPLPGKINVTPVEDKTSEEEPVIYANKLEAKNAFKALLESSNVESDWTWDQAMRVIINDKRYGALKTLGERKQAFNEYLNQRKKLEAEERRVKQRKARDDFLAMLEECKELTSSTRWSKAITMFEDDKRFSAVERPREREDLFENYLMELQKKERARAAEEHKKHIAEYRAFLESCEFIKANTQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIRDLEKEEEEHKRIHKEKIRRQERKNRDEFRKMLEEHAAEGMLNAKTRWRDYCAQVKDSHVYMAVASNTSGSMPKELFEDVMEEVEKQYQDDKARIKEAVKSGKIPMVASWTLEDFQTAVMEDDTFKGITNINMKLIYDDQVERLREKEVKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKALFEDSQEYKALDSDSYARELFEECVVHLKERLKEKERLREEEKAKKEKEREEKERKKDKERKEKERKEKEREKDKGKDRSRRDEMDSDALDADSHGSKDKKREKDKEKKHKRRHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDNSRRNGTRDDLEDGELGEDGEIH
Length960
PositionUnknown
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-1.229
Instability index56.90
Isoelectric point6.57
Molecular weight110196.56
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29738
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     163.69|      39|      39|     190|     228|       1
---------------------------------------------------------------------------
  190-  228 (73.07/39.59)	WQEHTSN.................DGKKYYYNKKTRQSSWEK......PAELMTPLERAD.AS
  231-  270 (63.60/33.56)	WKEFTTQ.................EGRKYYYNKVTKQSKWTI......PDELKMARELAEkAS
  273-  327 (27.01/10.27)	RHDHETEttavasstldaavnsvpPGAGSSHNMENTSSSSNTamqnggPSTVITP........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.35|      15|      15|     815|     829|       2
---------------------------------------------------------------------------
  815-  829 (26.33/11.94)	KKEKEREEKERKKDK
  831-  845 (26.31/11.92)	RKEKERKEKEREKDK
  862-  876 (19.71/ 6.88)	ADSHGSKDKKREKDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     448.54|      65|      65|     474|     538|       3
---------------------------------------------------------------------------
  407-  466 (80.05/53.12)	...............FKA..LLES.S.N..VESDWTWDQAMR.....VIINDKRYGALKT......LGERKQAFNEYLNQRKK..L...E...AEERRVK
  467-  537 (103.52/71.27)	Q........rkarddFLA..MLEE.CKE..LTSSTRWSKAIT.....MFEDDKRFSAVER......PREREDLFENYLMELQK..K...ERARAAEEHKK
  538-  599 (85.19/57.10)	H...........iaeYRA..FLES.CEF..IKANTQWRKVQD.....RLEDDERCSRLEK......I.DRLEIFQEYIRDLEK..E...E.....EEHKR
  601-  688 (60.35/37.88)	HkekirrqerknrdeFRK..MLEEhAAEgmLNAKTRWRDYCA.....QVKDSHVYMAVASntsgsmPKE...LFEDVMEEVEK..QyqdDKARIKEAVKS
  689-  750 (47.34/27.82)	G...........kipMVAswTLED.FQT..AVMEDDTFKGITninmkLIYDDQ....VER......LREKE......VKE..A..K...KRQRLGENFS.
  752-  813 (72.09/46.96)	....................LLYS.IKE..ISASSTWDDSKA.....LFEDSQEYKALDS......DSYARELFEECVVHLKErlK...EKERLREEEK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     247.02|      32|      32|      32|      63|       4
---------------------------------------------------------------------------
   32-   63 (67.67/42.40)	MPLQ.FRPVIPLQQPPQFMQPGQQFRPVGQA..MP
   69-   97 (54.34/32.40)	MPGQ.M.P..HFQQPAQHLPHSGQVPPTSQA..VP
   98-  123 (50.04/29.18)	MAYQ...PARPMSSGP..LQPPATF.PGGH...MP
  129-  151 (38.25/20.33)	MPPP.SYTYQPSSVPPTIVQP...WGP........
  152-  178 (36.72/19.19)	APGQnVPPVAPL......VQPGHQ..PVSSSttLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.13|      22|      22|     895|     916|       5
---------------------------------------------------------------------------
  877-  899 (23.93/10.04)	EKKHKRRHhdTADDVSS....eRDEKD
  900-  924 (29.92/14.49)	DSKKSRRH..SSDRKKSRKhthASDSD
  925-  946 (36.27/19.20)	SENRHKRH..KKDRDNSRR...NGTRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.28|      11|      19|       1|      11|       6
---------------------------------------------------------------------------
    1-   11 (23.86/13.67)	MASNMQPS...GPP
   18-   31 (18.42/ 8.73)	MMGSSAPSqnlGPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29738 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DAGISRANNEYSSKASTADMQNGASADDLEEAKKTMPLPGKINVTPVEDKTSEEEPVIY
2) KERLREEEKAKKEKEREEKERKKDKERKEKERKEKEREKDKGKDRSRRDEMDSDALDADSHGSKDKKREKDKEKKHKRRHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDNSRRNGTRDDLEDGELGEDGEIH
3) MASNMQPSGPPQQQRPPMMGSSAPSQNLGPPMPLQFRPVIPLQQPPQFMQPGQQFRPVGQAMPGANIGMPGQMPHFQQPAQHLPHSGQVPPTSQAVPMAYQPARPMSSGPLQPPATFPGGHMPTMGGPMPPPSYTYQPSSVPPTIVQPWGPAPGQNVPPVAPLVQPGHQPVSSSTTLPSINSSEPSSSDWQEHTSNDGKKYYYNKKTR
4) TIPDELKMARELAEKASNSRHDHETETTAVASSTLDAAVNSVPPGAGSSHNMENTSSSSNTAMQNGGPSTVITPVIST
339
805
1
254
397
960
208
331










Molecular Recognition Features






MoRF SequenceStartStop




1) KKHKRRHH
878
885