<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29737

Description Uncharacterized protein
SequenceMDQHHVQQQQQYVDPYRTMVLSPQPDHLNALQYSHQQQPQPQPPPQATPPPQHHHASLASHFHLLHLMTRLADAIGKGTRDQNSDALVEDLTSQFARCQQLLNSISGTLSSKSITVEGQRRSLEETQRLLDQRKDLITKYRSSVEGLLKGDARQ
Length154
PositionMiddle
OrganismOryza brachyantha
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.892
Instability index46.89
Isoelectric point7.17
Molecular weight17498.33
Publications
PubMed=23481403

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29737
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.98|      24|      27|       3|      27|       1
---------------------------------------------------------------------------
    3-   27 (43.48/22.11)	QHHVQQQQQYvDPYRTMVLSPQPDH
   32-   55 (51.49/23.32)	QYSHQQQPQP.QPPPQATPPPQHHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.14|      25|      27|      78|     103|       2
---------------------------------------------------------------------------
   78-  103 (37.86/26.41)	GTRDQNSdALVEDLTSQFARCQQLLN
  107-  131 (37.28/21.37)	GTLSSKS.ITVEGQRRSLEETQRLLD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29737 with Med9 domain of Kingdom Viridiplantae
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