<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29714

Description Uncharacterized protein
SequenceMNKLEIYDLKPLNWRLPISSNSLEYPDFYQPIRGRDEDIINQNTVQNGYTAPPAVQNETFSCNQLIIDSLQSNQVASNLELIFKSALDKRHTRNHPQSNYIKDLDAADANLYFKQLACTNIPLQNLLKLPRNLTPSVILHQLQLNQVDPRRSIWFIKLISKPSSENKQLSFNLSMDWTRVLTGQLSDKLIELPTPEGVLDNFDSKLWLSQFTYILDILRAFIVNGLLDNLTLHIWLLDHLKHIHMARLPLVTTLVLENMQGFYSSHQLTNGLVDAACCRLGQFKRTIAGENLTSLRSSLERIIINVFTCFPCSFVSPKLWISHGSLFESLIGTQPHYQAIQKRNHQMLYGNTDKSLSSTPYSSRQSLVRDITLLDTINTNTNIRACTLSYFQVDDKLPKRTIDEKITTMLDWASTENRNSQHRCYAVATILRFYISLQLKQKLSSKNVIKRHLQELIFSWIEVTSSDRKQEDVPKLIGELVRRRVFSYSSYLQHIIATGLMSNTKKSAIHKNILRDTPLFDASLSIVNLRRMSIDKQLNADDEKSLDSLIRTFRALLPRLYKNTENIPLITTLDLDNSFRAFKKLPLFYRYRCIQSNLLPSVYAFIDTKTSESKMSIDEVATVISILEYFEDFASLQSLLMELIPKISERQVLFLLMDTIRRNWTTLVCLNGMDKLIKCVTDKYYAFNSSGGHVRPLLLLLVTAKNTSQLPHQLLPFVNDAAAALNRSLRTSMSPSPPPSRISDVQKLLYDSTISNAADLATTLWFRHSSYTQWGSSAWMGVLDALKVKHDNTPQLVSCFSTFLHEVNNRFPDGLEKHITESLVKHPETLLSGELSEVMKSILVQMVVRRVVQTTSIIEDVYLPLISQSPSDEVVLNLNDVLLSILTPEKKSPMILRDYQHLMTRRGKAYRPPYLGKLAEILPVLVNYEVSDNVSETVKSSCRFLRESISSQSAFSTACMRDLDNVYEVMMSASKTNIQELIIDTLKQLISFSNDDVEHDDKFAIHHANPWTISRHKIVLHLVLNYNSCENKRCHTTVSDLLSQMDNNTLVLDMLRGISGNAGQEFANIKFSSIMTLLASLKDLIDGDKVDDELRCSSEIYGNVEMVSQVLLHKKVTLPLIDSDIITQMIKNLNLCFQSIFLPGDETLENGEVVEENEDTKMTESISHSRTLEVLCMLIQVLLRVPESLTASISDIGNRILPHLLRQLTRSDDGQFEKLYDTIIALVERIPGNSTQDAFNVVDPSGTDLPIEIRRVLPLTQSMRIQTKFSSWDLLDQIPETNDSKRVQFNAPQLHKWLDAQLVNDRLLDANSQIEFEYERNIPGDGLEAGPILAYQFKRSLRNQDLGMTTEPPVDDVGINLKKRKVDEENGSNGNGIALTPASNLSTTTQNRRTSTRRRK
Length1400
PositionKinase
OrganismWallemia mellicola (strain ATCC MYA-4683 / CBS 633.66) (Wallemia sebi (CBS 633.66))
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Wallemiomycotina> Wallemiomycetes> Wallemiales> Wallemiaceae> Wallemia.
Aromaticity0.07
Grand average of hydropathy-0.232
Instability index49.81
Isoelectric point6.73
Molecular weight159420.93
Publications
PubMed=22326418

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29714
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     184.75|      63|     215|     922|     995|       1
---------------------------------------------------------------------------
  925-  995 (86.44/67.03)	LVNYEVsdnVSETVKSScrfLRESISSQSAFSTACM..RDLDNVYEvMMSASKTNIQELIIDTL.KQLISfSND
 1148- 1213 (98.31/46.96)	LENGEV...VEENEDTK...MTESISHSRTLEVLCMliQVLLRVPE.SLTASISDIGNRILPHLlRQLTR.SDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.08|      28|     251|     861|     888|       2
---------------------------------------------------------------------------
   66-   85 (20.37/ 9.09)	....IIDSLQSNQVASNLELIFKS....
  861-  888 (45.64/31.38)	VYLPLISQSPSDEVVLNLNDVLLSILTP
 1116- 1143 (50.07/35.29)	VTLPLIDSDIITQMIKNLNLCFQSIFLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     184.67|      55|     251|     114|     168|       3
---------------------------------------------------------------------------
  114-  154 (59.16/36.61)	.....................................KQLAC....TN....IPLQNLLKLPRNL.TPSVI..LHQLQLNQVDPRRSI..W
  287-  320 (32.88/16.61)	....................................................IAGENLTSLRSSL.ERIIInvFTCFPCSFVSPK..L..W
  327-  405 (54.67/33.19)	FESLIgTQPhyqaiQKRNHQmlygntdkslsstpyssRQSLV....RD....ITLLDTINTNTNI.R.ACT..LSYFQVDDKLPKRTIdeK
  406-  454 (37.96/20.47)	ITTML.DWA.....STENRN.................SQHRCyavaTIlrfyISLQ....LKQKLsSKNVI..KRHLQ.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.47|      22|     318|     227|     263|       4
---------------------------------------------------------------------------
  199-  226 (32.82/ 6.57)	LDNFDSKLWLsqftyiLDIL......RAFIVNGL
  227-  254 (35.65/32.31)	LDNLTLHIWL......LDHLkhihmaRLPLVTTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.83|      32|     215|     784|     822|       6
---------------------------------------------------------------------------
  784-  817 (48.70/35.17)	DALKVKHDNtPQLVSCFSTFLHEVNNrFPDGLEK
 1001- 1032 (58.13/32.88)	DKFAIHHAN.PWTISRHKIVLHLVLN.YNSCENK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29714 with Med12 domain of Kingdom Fungi
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